I am attempting to download the OlinkAnalyze package in order to test it, but I am encountering errors related to dependencies and the package is not installing. Has anyone else experienced this issue?
I just wanted to leave my gratitude here. This post helped me with a related issue and I wanted to mention it in case others have similar issues in the future:
If anyone else is having trouble installing certain Bioconductor packages on JupyterLab, Ondrej's helpful tip may resolve your issue. For example, I was unable to install the ‘SeqVarTools’ package. I knew that it was because of an issue with ‘nplotr’ as a dependency, but I was struggling to figure out why I was unable to install it.
Opening a terminal and running:
apt-get update
apt-get install cmake
was necessary and sufficient to install all the packages I required for my analysis. Thank you again!
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Do you use JupyterLab or RStudio?
I tried installing in JupyterLab R
The following worked on my side:
First, go to JupyterLab Terminal and run:
apt-get update
apt-get install cmake
Then, in R notebook:
install.packages("OlinkAnalyze")
remove.packages("vctrs")
install.packages("vctrs")
library("vctrs")
library("OlinkAnalyze")
Hi Ondrej,
I just wanted to leave my gratitude here. This post helped me with a related issue and I wanted to mention it in case others have similar issues in the future:
If anyone else is having trouble installing certain Bioconductor packages on JupyterLab, Ondrej's helpful tip may resolve your issue. For example, I was unable to install the ‘SeqVarTools’ package. I knew that it was because of an issue with ‘nplotr’ as a dependency, but I was struggling to figure out why I was unable to install it.
Opening a terminal and running:
apt-get update
apt-get install cmake
was necessary and sufficient to install all the packages I required for my analysis. Thank you again!
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