How can I exclude with participants have specific genotype from my cohort using cohort browser?

Permanently deleted user

I want to exclude from in my cohort with participants have genotype variant ID rsXXXX. I used genomic filter variant ID option on Cohort Browser for that. But there is just with genotype ID rsXXXX option. There is not without genotype ID rsXXXX option. How can I exclude with participants have specific genotype from my cohort? [Image: Ekran 2023-09-24 15.50.05] [Image: Ekran 2023-09-24 15.44.11]

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2 comments

  • Comment author
    Rachael W The helpers that keep the community running smoothly. UKB Community team Data Analyst

    Hi Burcu,

     

    one way to get the participants without variants :

     

    save the with-variant cohort to your project storage,

    save the full cohort to your project storage,

    make sure the with-variant and the full cohort are both loaded in the cohort browser,

    click Combine Cohort (see yellow icon in this screenshot)

    imageclick Subtraction to get participants in A but not in B

     

    image 

    save the result.

     

    (By the way, are you sure you want to exclude both homozygous and heterozygous participants?)

    0
  • Comment author
    Permanently deleted user

    Hi Rachael W ? ,

     

    Thanks to your response, my problem is solved. Thanks you so much. ? (yes, I'm sure)

    0

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