
Rachael W
UKB Community team
Data Analyst
Activity overview
Latest activity by Rachael W
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Hi Philip,I don't have any useful update, sorry. There has been some further investigation, but nothing conclusive.It has definitely not been corrected yet, and if any correction is applied it wi...
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Hi Hannah,if the job failures definitely occur even with High Priority, then the issue needs to be investigated individually by the DNAnexus support team.Please add “org-support” (without quotes) t...
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Hi Oliver,to contact DNAnexus technical support, please use the Help tab in the UKB-RAP gui, or the Support option on the UKB-RAP landing page, or email ukbiobank-support@dnanexus.com.When the UKB-...
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Hi Hayley,from the error message it looks like you might be running out of memory. I suggest you try using a larger worker instance for RStudio, which can be set as you start RStudio, like thisWhe...
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Hi Lu Ao,The WGS data has the most comprehensive set of individuals. Please see Showcase Field 22418 , which says that 487921 participants have genotyping data, together with Field 32050 which say...
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Hi Christine,I am not an expert on costs, and these are guesses based mainly on my own use of the UKB-RAP, plus anecdotal information.If you are using raw images or Whole Genome Sequencing data, yo...
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I am not a geneticist, and I can't help with that question. There are two publications that describe what qc has already been performed: by Van Hout et al and Backman et al .I suggest you start ...
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Data dispense is switched on, see this thread .
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Hi Yongyong,has data been dispensed to the UKB-RAP project ? See “Dispensing Data” in this page of the documentation .How many Data Bundles can be seen in “Data Dispensed” in the Settings tab ? ...
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Don't forget to save your results to a file in jupyterlab storage, using fwrite, and then copy them to your main project storage, using dx upload. The jupyterlab storage will disappear when the j...
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