UKB-RAP tips and tricks

A place for researchers to share any tips and tricks to navigate the UKB-RAP

Spark Applet fails because of dx-spark-submit
- Ba Khuong Dang
- 14 April 2026 13:47
- 0 votes
- 0 comments
How to use dx extract_dataset without download to local machine
- Jeanne Savage
- 01 April 2026 21:53
- 0 votes
- 1 comment
Data exraction
- George Aryee
- 19 March 2026 12:02
- 0 votes
- 1 comment
DNANexus OR/AND operator
- Sarah Gabriëlle Simone Kraan
- 19 March 2026 11:15
- 1 vote
- 1 comment
how to install Bioconductor package limma in RStudio Posit Workbench
- Bhawana Singh
- 08 February 2026 00:48
- 0 votes
- 1 comment
What is the cleanest way to extract phenotype data at scale?
- Eric Kernfeld
- 31 January 2026 16:31
- 0 votes
- 3 comments
Why some participants have cancer records in IDC10 while I applied "Cancer diagnosed by doctor | Instance 0" as "No" ?
- Dongwoo Park
- 18 December 2025 10:40
- 0 votes
- 1 comment
Availability of SQL Runner on UKB-RAP?
- Sean Corbett
- 14 November 2025 16:29
- 0 votes
- 0 comments
Jupyterlab malfunctioning after update
- Stephan Cordogan
- 18 September 2025 18:02
- 0 votes
- 1 comment
Bulk-downloading job logs and investigating failed jobs
- Kristen
- Edited 28 August 2025 03:18
- 0 votes
- 0 comments
How to use Swiss Army Knife for an interactive/ssh session
- Kristen
- Edited 05 September 2025 21:40
- 4 votes
- 0 comments
Getting dx fuse (/mnt/project/) and the dx upload/download commands to work on Cloud Workstation
- Kristen
- 28 August 2025 02:11
- 4 votes
- 0 comments
How to make a report with cost/runtime/re-runs/preemptions/etc. for your jobs
- Kristen
- Edited 28 August 2025 01:47
- 2 votes
- 0 comments

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