I would like to export a list of EIDs of people taking a specific medication list, e.g. aspirin and/or ibuprofen. What is the easiest way to do so from the platform please? And could I look both at gp scripts and also at questionnaire data? Former User of DNAx Community_81 05 December 2023 00:00 2 comments I found this https://community.dnanexus.com/s/question/0D582000003pxeVCAQ/extract-record-tables-using-the-dx-command-line but is there a way to search also across this table here? https://biobank.ndph.ox.ac.uk/ukb/field.cgi?id=20003 ? Does anyone have the exact script to do this please? Comments 2 comments Sort by Date Votes Former User of DNAx Community_81 19 December 2023 10:19 @Chai Fungtammasan? ? 0 Chai Fungtammasan DNAnexus Team 19 December 2023 16:03 It probably need to be done in Jupyterlab. We don't have exact script, but we have tutorial and example code (link from tutorial page) here.https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/genomic-target-discovery-for-ischaemic-heart-disease-using-gwas-ld-clumping-and-phewas https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/gwas-ex 0 Please sign in to leave a comment.
Comments
2 comments
@Chai Fungtammasan? ?
It probably need to be done in Jupyterlab. We don't have exact script, but we have tutorial and example code (link from tutorial page) here.
https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/genomic-target-discovery-for-ischaemic-heart-disease-using-gwas-ld-clumping-and-phewas
https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/gwas-ex
Please sign in to leave a comment.