Is it possible to run Regenie step 2 with whole genome data rather than whole exome data considering that it is in pVCF format and there are more than 1 file for each chromosome?
I'm pretty sure this can be done with some modification of workflow/script, but processing pVCF would take a very long time and cost a lot. I would personally suggest you wait for the release of WGS in PLINK which should be about Q3 or Q4 this year.
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I'm pretty sure this can be done with some modification of workflow/script, but processing pVCF would take a very long time and cost a lot. I would personally suggest you wait for the release of WGS in PLINK which should be about Q3 or Q4 this year.
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