Hello, If I am looking to create a dataframe of around 200,000 participants, with individual nucleotide information regarding around 20 SNPs, what is the best way to go about doing this? Thanks :)

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  Ondrej Klempir DNAnexus Team

  • 14 September 2022 12:45

  @Lucy Gunnell? , Spark based technology might be a good option for this use case.

   

  https://documentation.dnanexus.com/science/using-hail-to-analyze-genomic-data#filter-by-variant-ids

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