How do I specify the field titles for Table Exporter? I want to the export Docosahexanoic Acid field. I have tried specifying this field as 'p23450_i0', 'p23450_i0_a0', and even the human-readable name, but keep getting a 'Field title(s) not found' error.

• 

  Anastazie Sedlakova DNAnexus Team

  • 18 November 2021 12:03

  Hello,

  'p23450_i0' is field name. Corresponding field title is Docosahexaenoic Acid | Instance 0. Can you please try this field title?

  0
• 

  Former User of DNAx Community_4

  • 19 November 2021 01:19

  Hi Anastazie,

  Thanks for the clarification! I wasn't actually sure which one of those was the field title. I tried again with Docosahexanoic Acid | Instance 0, but that also failed. Do I need to enter something for the Entity argument? I tried leaving it blank, and I tried entering Participant, but both of those failed. I am trying to export fields from a cohort. Should I be using the Cohort/Dashboard Options section instead of the Advanced Options? I tried putting Docosahexanoic Acid | Instance 0 in the Cohort Table Entity Titles section, but that did not work either. I'd really just like to see a screenshot of how someone else successfully set up a Table Exporter run so that I could have an example to work from. Thanks again!

  0
• 

  Anastazie Sedlakova DNAnexus Team

  • 22 November 2021 14:08

  Hello,

  maybe problem is with the entity? Entity provided should be entity name, which is lowercase, e.g. participant.

  I was able to run table exporter successfully with the following settings:

  Dataset or Cohort or Dashboard =dataset_ID

  Output Prefix= docosahexaenoic_acid

  Entity = participant

  Field Titles = Participant ID, Docosahexaenoic Acid | Instance 0

  Output File Format = CSV

  Coding Option = REPLACE

  Header Style = FIELD-NAME

   

  Hope that helps!

  0
• 

  Former User of DNAx Community_4

  • 24 November 2021 00:16

  Thanks, that works!

  0

Please sign in to leave a comment.