Anastazie Sedlakova DNAnexus Team

If I understand it correctly, you want to filter BGEN file the same way you filter VCF files (e.i. using some information in the INFO column). To my understanding from BGEN file specification, ther...

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• 06 November 2023 13:34
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{@005t0000008C5AmAAK}? I looked into PheWAS package and I think that problem is in createPhenotypes. When using phecode_map_icd10, it maps ICD10 to ICD9. ICD10 has about 69000, whereas ICD9 has onl...

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• 12 July 2023 15:40
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You can use Cohort browser to select participants based on their EIDs and then use Variant browser to search for particular rsID. This will work if you have access to 450K WES. If not, you can use ...

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• 08 August 2022 12:10
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I would suggest to install accelerometer package using pip in ttyd.

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• 24 May 2022 12:54
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-iin parameter can take one file, so depending on your use case, your folder can be e.g. zipped and later unzipped on the worker, you can e.g. loop through each file in the zipped folder and proces...

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• 24 May 2022 12:32
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I think that this is duplicate of this question, please contact UKB RAP support team (ukbiobank-support@dnanexus.com) .

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• 19 May 2022 14:41
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Hello, based on your request our team generated helper CSV file containing chromosome, first coordinate and last coordinate. Please contact support team (ukbiobank-support@dnanexus.com) to request it.

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• 16 February 2022 14:35
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Hello,can you please provide more details about your analysis? What data are planning to use? In what programming language is written your code?

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• 13 January 2022 13:02
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Important note: code that I posted below will work in the terminal launched from Spark JupyterLab, Other option would be to download files into instance storage using dx download.

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• 06 December 2021 17:08
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