Whole Exome Sequencing
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GLnexus error message
- Zeid Kuzbari
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Using Batch Files in Swiss Army Knife for Mutect2 Pipeline
- Nicole Powell
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Discrepancies between 200K and 270K WES datasets and with WGS data
- David Curtis
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Missing Loftee annotations when running with Hail
- James Harrison
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some questions about the Whole exome sequencing analysis(variants filtering)
- Yaying Sun
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PLEASE!!How can I perform association test(GWAS) by using WES data in a pVCF?
- Yaying Sun
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Low predictive performance on WES
- Nora Verplaetse
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Burden test error in ukb23158_500k_OQFE.sets.txt.gz
- Elham Alhathli
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Mutectcaller continues to fail when I try to call somatic mutation. Can you help me to resolve this error?
- Xi Li
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bcftools - VCF parse error
- Myvizhi Esai Selvan
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Decreasing Run/Time Cost in WES Variant QC
- Mauricio Garcia
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A variant from a UKB case in gnomAD is missing from the UKB VCF file
- Arezoo Mohajeri
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What does a manifest txt looks like in DNAnexus analysis?
- Lei Xiao
- Edited
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ANNOVAR in UKB-RAP
- Lynette Sylvia Graver
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Number of sites removed by ukb23158_500k_OQFE.90pct10dp_qc_variants.txt
- Bastien Rioux
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Male heterozygotes on X chromosome
- Bastien Rioux
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Burden test from regenie in UKB WES data; the result does not contain Alleles or BETA and SE
- Former User of DNAx Community_21
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Is there a map for which regions are in each 500k Whole EXOME Sequencing final release pVCF (23157) block and for the alternative gnoMAD pVCF (24068)?
- Former User of DNAx Community_94
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How can I extract AD, AF, DP information from ##FORMAT lines of snpEff.vcf file?
- Permanently deleted user
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Recommendations for understanding WES pVCF file data in detail
- Former User of DNAx Community_78
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Running HAIL-based SampleQC Script in JupyterLab
- Former User of DNAx Community_82
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How to get skato to work with Regenie?
- Former User of DNAx Community_21
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What's the difference between Exome sequences_Alternative exome processing and Exome sequences in the Bulk data? Is there any document where we can read about this?
- Permanently deleted user
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Hello, I would like to know what would possibly be the best way of doing QC for the WES final data. Previously we have generated our in-house pipelines to QC the data in terms of genotypes and variants by using SoS in our own cluster
- Permanently deleted user
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BOLT-LMM download link broken
- Former User of DNAx Community_27
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Now I have obtained the eid numbers of patients. How can I get the exon sequencing of these specific patients?
- Former User of DNAx Community_66
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How do I call the table_exporter applet from my WDL?
- Former User of DNAx Community_98
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SnpEff not labelling all LOF variants? Certain stop gained/lost or frameshift variants are not labelled as being LOF?
- Permanently deleted user
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I want to use WES data to perform analysis, but I can't find information on the exome sequencing batch. Second, are there principal components for WES data analysis?
- Former User of DNAx Community_99
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How to locate a region of interest within a chromosome while there are multiple pVCF files for that chromosome (WES data)?
- Former User of DNAx Community_23
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