How to use parabricks mutect2 caller on multiple .cram files?

Hi   I am looking to identify some somatic mutations using the parabricks mutect app on UKRAP. However on the interface it looks like it only allows us to select 1 .cram file? How can I apply it to all the .cram files from the exome sequencing directory?

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    Ondrej Klempir DNAnexus Team

    Is Batch mode the feature you are looking for? If so, I recommend running a couple of tests on a small subset of files first.

     

    Screenshot 2023-04-03 at 13.24.26

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