When I create a notebook in JupyterLab from the DNAnexus tab (project storage), I can't open it. Message says its a protected project. Any suggestions? Do I have too always use dx download then?
When a project is set up, the Principal Investigator can add collaborators to the project, and can specify what admin privileges each collaborator has. It is possible that your permissions have not been set up to allow editing the project.
I suggest you have a look at your main project page and see whether you are Admin/Contributor/Uploader/Viewer,
See this image which illustrates that I have Admin access for my project
If you are a Viewer or Uploader, you might need to ask your Principal Investigator to change that to Contributor.
If this turns out not to be the cause of the trouble, it might relate to the fact that the project is quite new. Have you managed to do anything else in the project? For example, can you use the Cohort Browser?
If you need more help, could you describe the steps you went through to create the notebook, and what you are doing to try to open it.
Yes I have used the cohort browser. I did the process as in the tutorials. I went to the tab at the top that says DNAnexus and ?New Notebook?. to open it I went to the vertical tab on the left sidebar ?DNAnexus?.
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When a project is set up, the Principal Investigator can add collaborators to the project, and can specify what admin privileges each collaborator has. It is possible that your permissions have not been set up to allow editing the project.
I suggest you have a look at your main project page and see whether you are Admin/Contributor/Uploader/Viewer,
See this image which illustrates that I have Admin access for my project
If you are a Viewer or Uploader, you might need to ask your Principal Investigator to change that to Contributor.
If this turns out not to be the cause of the trouble, it might relate to the fact that the project is quite new. Have you managed to do anything else in the project? For example, can you use the Cohort Browser?
If you need more help, could you describe the steps you went through to create the notebook, and what you are doing to try to open it.
thank you Rachael. I'm the admin and I'm the one that opened the project. Can it be something else?
Yes I have used the cohort browser. I did the process as in the tutorials. I went to the tab at the top that says DNAnexus and ?New Notebook?. to open it I went to the vertical tab on the left sidebar ?DNAnexus?.
Have you done anything with Project Settings?
Are you in a SparkJupyterLab or a single JupyterLab?
The problem was with the settings, I had the delete permission only for admin. Thank you!
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