Per the answer by @Ondrej Klempir?, you can see which variants belong to which regions in the qc_metrics_graphtyper_v2.7.1_qc.tab.gz file that is dispensed in the QC subfolder of field #23352.
I need a list of 502,494 eids and which variants of rs56041637 each one carries. When I use a viewer on a pVCF UKB23352_c19 file I see only a chromosome diagram. How do I get what I need?
The file qc_metrics_graphtyper_v2.7.1_qc.tab.gz would have the column "contig" and "POS" for the variants that you need and the "region" column indicating which region those variants belong to. You can use that information to figure out which files among the 1000 files you need.
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Per the answer by @Ondrej Klempir?, you can see which variants belong to which regions in the qc_metrics_graphtyper_v2.7.1_qc.tab.gz file that is dispensed in the QC subfolder of field #23352.
I already know which variants belong to which regions from https://www.ncbi.nlm.nih.gov/snp/rs56041637#variant_details
I need to locate the pVCF UKB23352_c19 file that has position chr19:17642033-17642056. There are 1000 files. How do I do it?
I need a list of 502,494 eids and which variants of rs56041637 each one carries. When I use a viewer on a pVCF UKB23352_c19 file I see only a chromosome diagram. How do I get what I need?
qc_metrics_graphtyper_v2.7.1_qc.tab.gz does not tell me which file I need. How do I locate the file I need?
The file qc_metrics_graphtyper_v2.7.1_qc.tab.gz would have the column "contig" and "POS" for the variants that you need and the "region" column indicating which region those variants belong to. You can use that information to figure out which files among the 1000 files you need.
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