Hi Everyone,
I know that working with pheno data can be difficult. If you are using the new dx extract_dataset functionality, the pheno data is returned as raw values, and categorical variables need to be decoded (such as ICD10 codes, gender, etc).
I've written a small R package called dxhelper to help you decode these raw pheno files. It uses a tidy interface, so hopefully it is easy to use.
The package (along with installation instructions) is available here: https://github.com/laderast/dxhelper
It's always being improved, so please let me know of any issues here: https://github.com/laderast/dxhelper/issues
Best,
Ted
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Edit: Note the package has been renamed to "xvhelper", for internal reasons:
https://github.com/laderast/xvhelper
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