Webinar Mar 9: End to End Target Discovery with GWAS and PheWAS
When: Thursday, March 9 at 8am PST/4pm GMT
Register Here: https://hello.dnanexus.com/ukb-rap-end-to-end-target-discovery
Learn how to create and run your own target discovery pipeline with GWAS and PheWAS. During this webinar we will show an end-to-end target discovery pipeline run entirely on UKB RAP that you will be able to replicate for your own research projects on the platform.
You will learn how to:
- Extract data using dx extract_dataset
- Make sample and variant QC
- Run GWAS analysis using REGENIE app
- Perform LD clumping using PLINK to cluster significant GWAS variants
- Run PheWAS analysis
As this is an advanced webinar, we expect that audience has experience with:
- Performing analysis on UKB RAP
- Running JupyterLab on UKB RAP
- Compiling and running WDL workflow
- Running SAK using GUI or CLI
You can find more information on the above concepts at our virtual training center or on the Community forum.
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Recording is now available: https://www.youtube.com/watch?v=jN25SIGZFDE
Slides from the webinar are attached.
You can also find associated code here: https://github.com/dnanexus/UKB_RAP/tree/main/end_to_end_gwas_phewas
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