WGS QC and list of variants
In previous WGS releases, we could visualize variants in the 150k WGS cohort with the qc_metrics_graphtyper_v2.7.1_qc.tab.gz file. Is there any comparable resource to that for the 500K DRAGEN release?
I noticed there are several data fields available in category 185 but it seems like on the RAP I can find only data field 24310 with the pVCF. Am I looking in the wrong place? If not, are there any plans to include the other data fields on the RAP?
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To access individual-level WGS data, please request an additional dispensal, using the “Dispense More Data” button in your project settings.
Due to the size of the November 2023 data release, and the expected very high demand, dispensing of data was staged. See the FAQ document at https://www.ukbiobank.ac.uk/media/dovbae03/uk-biobank-final-whole-genome-sequencing-release-faqs_v1-0.pdf , particularly page 6 question 7.
This third-stage is needed for individual-level data based on Genotyping, WES and WGS, which includes fields : 23141, 23142, 23143, 23144, 23151, 23152, 23153, 23154, 24066, 24067, 23370, 23372, 23382, 23381, 23378, 23379, 23380, 23377, 23383, 23384, 24056, 24058, 24048, 24065, 24062, 24064, 24059, 24061, 24055, 24050, 24051, 24053, 22002, 23181, 23183 .
There are plans to include BGEN and PLINK version joint variant calls files, during 2024.
If this does not include the items you are looking for, please give a bit more detail.
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