Using Stata

Hello,

I'm trying to follow the instructions in here to be able to use Stata in the DXJupiterLab enviroment. My current UK Biobank analysis pipeline is written in Stata and I want to be able to use that code in here. 
We've bought a stata license, and I made a json file as instructed. However the kernal for Stata doesn't start

I've copied the log file below - can anyone help me?

[Jul 31 2024, 3:35 PM] Logging initialized (priority)
[Jul 31 2024, 3:35 PM] Logging initialized (bulk)
[Jul 31 2024, 3:35 PM] Downloading bundled file resources.tar.gz
[Jul 31 2024, 3:35 PM] >>> Unpacking resources.tar.gz to /
[Jul 31 2024, 3:35 PM] tar: Removing leading `/' from member names
[Jul 31 2024, 3:35 PM] dxpy/0.380.0 (Linux-5.15.0-1066-aws-x86_64-with-glibc2.29) Python/3.8.10
[Jul 31 2024, 3:35 PM] bash running (job ID job-Gpb4f6jJ2Q1xQy07y0FBp32Q)
[Jul 31 2024, 3:35 PM] Setting session duration to 60 minutes
[Jul 31 2024, 3:35 PM] Checking JupyterLab server state
[Jul 31 2024, 3:35 PM] Running session duration monitoring
[Jul 31 2024, 3:35 PM] + echo '{
[Jul 31 2024, 3:35 PM]       "files" : [],
[Jul 31 2024, 3:35 PM]       "directories" : [
[Jul 31 2024, 3:35 PM]          {
[Jul 31 2024, 3:35 PM]           "proj_id" : "project-GFz3zvQJ2Q1gb71g4gYY49Bv",
[Jul 31 2024, 3:35 PM]           "folder" : "/",
[Jul 31 2024, 3:35 PM]           "dirname" : "/project"
[Jul 31 2024, 3:35 PM]          }
[Jul 31 2024, 3:35 PM]       ]
[Jul 31 2024, 3:35 PM]     }'
[Jul 31 2024, 3:35 PM] + MOUNTDIR=/mnt
[Jul 31 2024, 3:35 PM] + mkdir -p /mnt
[Jul 31 2024, 3:35 PM] + /home/dnanexus/dxfuse -version
[Jul 31 2024, 3:35 PM] v1.1.1
[Jul 31 2024, 3:35 PM] + /home/dnanexus/dxfuse -readOnly /mnt .dxfuse_manifest.json
[Jul 31 2024, 3:35 PM] The log file is located at /root/.dxfuse/dxfuse.log
[Jul 31 2024, 3:35 PM] starting fs daemon
[Jul 31 2024, 3:35 PM] wait for ready
[Jul 31 2024, 3:35 PM] Daemon started successfully
[Jul 31 2024, 3:35 PM] Mounted project-GFz3zvQJ2Q1gb71g4gYY49Bv in /mnt/project
[Jul 31 2024, 3:35 PM] + dxfuse_rval=0
[Jul 31 2024, 3:35 PM] + [[ 0 -eq 0 ]]
[Jul 31 2024, 3:35 PM] + echo 'Mounted project-GFz3zvQJ2Q1gb71g4gYY49Bv in /mnt/project'
[Jul 31 2024, 3:35 PM] + set +x -e
[Jul 31 2024, 3:35 PM] Loading the Docker image container-Gkvjq8jJ71z2PV4K5KVbQFzf:dxjupyterlab-stata_4.3.0.tar.gz
[Jul 31 2024, 3:36 PM] Loaded image: dnanexus/dxjupyterlab-stata:4.3.0
[Jul 31 2024, 3:36 PM] 
[Jul 31 2024, 3:36 PM] Using Stata settings file from job input
[Jul 31 2024, 3:36 PM] Confirmed Stata installed in dnanexus/dxjupyterlab-stata:4.3.0
[Jul 31 2024, 3:36 PM] + docker run -p 443:8888 -v /home/dnanexus:/home/dnanexus -v /var/run/docker.sock:/var/run/docker.sock -v /mnt:/mnt:ro -e DX_RUN_DETACH=1 --device /dev/fuse --cap-add SYS_ADMIN --cap-add MKNOD --security-opt apparmor=unconfined --name=dxjupyterlab_server --init dnanexus/dxjupyterlab-stata:4.3.0 /opt/start_jupyterlab.sh ''
[Jul 31 2024, 3:37 PM] Installing Jupyter kernel spec
[Jul 31 2024, 3:37 PM] [33m(Deprecated) Installing extensions with the jupyter labextension install command is now deprecated and will be removed in a future major version of JupyterLab.
[Jul 31 2024, 3:37 PM] 
[Jul 31 2024, 3:37 PM] Users should manage prebuilt extensions with package managers like pip and conda, and extension authors are encouraged to distribute their extensions as prebuilt packages [0m
[Jul 31 2024, 3:37 PM] Building jupyterlab assets (production, minimized)
[Jul 31 2024, 3:38 PM] -\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/--\|/-\|/--\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-\|/-
[Jul 31 2024, 3:38 PM] Using Stata settings file from job input
[Jul 31 2024, 3:38 PM] JupyterLab version: 3.6.1
[Jul 31 2024, 3:38 PM] Starting JupyterLab...
[Jul 31 2024, 3:38 PM] [W 2024-07-31 14:38:38.612 ServerApp] notebook_dir is deprecated, use root_dir
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.039 ServerApp] jlab_dx | extension was successfully linked.
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.042 ServerApp] jupyter_server_fileid | extension was successfully linked.
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.044 ServerApp] jupyter_server_ydoc | extension was successfully linked.
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.047 ServerApp] jupyterlab | extension was successfully linked.
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.050 ServerApp] nbclassic | extension was successfully linked.
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.050 ServerApp] Writing Jupyter server cookie secret to /home/dnanexus/.local/share/jupyter/runtime/jupyter_cookie_secret
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.230 ServerApp] notebook_shim | extension was successfully linked.
[Jul 31 2024, 3:38 PM] [W 2024-07-31 14:38:39.282 ServerApp] WARNING: The Jupyter server is listening on all IP addresses and not using encryption. This is not recommended.
[Jul 31 2024, 3:38 PM] [W 2024-07-31 14:38:39.282 ServerApp] WARNING: The Jupyter server is listening on all IP addresses and not using authentication. This is highly insecure and not recommended.
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.283 ServerApp] notebook_shim | extension was successfully loaded.
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.283 ServerApp] Jupyter server extension jlab_dx loaded
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.284 ServerApp] jlab_dx | extension was successfully loaded.
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.284 FileIdExtension] Configured File ID manager: ArbitraryFileIdManager
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.284 FileIdExtension] ArbitraryFileIdManager : Configured root dir: /opt/notebooks
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.284 FileIdExtension] ArbitraryFileIdManager : Configured database path: /home/dnanexus/.local/share/jupyter/file_id_manager.db
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.285 FileIdExtension] ArbitraryFileIdManager : Successfully connected to database file.
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.285 FileIdExtension] ArbitraryFileIdManager : Creating File ID tables and indices with journal_mode = DELETE
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.302 ServerApp] jupyter_server_fileid | extension was successfully loaded.
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.303 ServerApp] jupyter_server_ydoc | extension was successfully loaded.
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.304 LabApp] JupyterLab extension loaded from /opt/conda/lib/python3.9/site-packages/jupyterlab
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.304 LabApp] JupyterLab application directory is /opt/conda/share/jupyter/lab
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.306 ServerApp] jupyterlab | extension was successfully loaded.
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.318 ServerApp] nbclassic | extension was successfully loaded.
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.319 ServerApp] Serving notebooks from local directory: /opt/notebooks
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.319 ServerApp] Jupyter Server 1.24.0 is running at:
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.319 ServerApp] https://job-Gpb4f6jJ2Q1xQy07y0FBp32Q.dnanexus.cloud/lab
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.319 ServerApp]  or http://127.0.0.1:8888/lab
[Jul 31 2024, 3:38 PM] [I 2024-07-31 14:38:39.319 ServerApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).
[Jul 31 2024, 3:38 PM] DXJupyterLab Server is running
[Jul 31 2024, 3:40 PM] [I 2024-07-31 14:40:48.622 ServerApp] 302 GET / (10.0.3.1) 0.46ms
[Jul 31 2024, 3:40 PM] [W 2024-07-31 14:40:54.523 ServerApp] 404 GET /api/me?1722436855066 (10.0.3.1) 46.11ms referer=https://job-gpb4f6jj2q1xqy07y0fbp32q.dnanexus.cloud/lab?
[Jul 31 2024, 3:40 PM] [I 2024-07-31 14:40:56.431 LabApp] Build is up to date
[Jul 31 2024, 3:41 PM] [I 2024-07-31 14:41:20.116 ServerApp] Creating new notebook in 
[Jul 31 2024, 3:41 PM] [I 2024-07-31 14:41:20.173 ServerApp] Writing notebook-signing key to /home/dnanexus/.local/share/jupyter/notebook_secret
[Jul 31 2024, 3:41 PM] [I 2024-07-31 14:41:20.530 ServerApp] Kernel started: 73251de9-d116-4d8a-b2b4-812c9f721942
[Jul 31 2024, 3:41 PM] Traceback (most recent call last):
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:41 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:41 PM]     exec(code, run_globals)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:41 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:41 PM]     app.initialize(argv)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:41 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:41 PM]     self.init_kernel()
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:41 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:41 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:41 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:41 PM]     self.init_console()
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:41 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:41 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:41 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:41 PM]     return self.eof(e)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:41 PM]     raise exc
[Jul 31 2024, 3:41 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:41 PM] <pexpect.pty_spawn.spawn object at 0x7fc23f8ba070>
[Jul 31 2024, 3:41 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:41 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:41 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:41 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:41 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:41 PM] match: None
[Jul 31 2024, 3:41 PM] match_index: None
[Jul 31 2024, 3:41 PM] exitstatus: None
[Jul 31 2024, 3:41 PM] flag_eof: True
[Jul 31 2024, 3:41 PM] pid: 12087
[Jul 31 2024, 3:41 PM] child_fd: 45
[Jul 31 2024, 3:41 PM] closed: False
[Jul 31 2024, 3:41 PM] timeout: 30
[Jul 31 2024, 3:41 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:41 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:41 PM] logfile_read: None
[Jul 31 2024, 3:41 PM] logfile_send: None
[Jul 31 2024, 3:41 PM] maxread: 2000
[Jul 31 2024, 3:41 PM] ignorecase: False
[Jul 31 2024, 3:41 PM] searchwindowsize: None
[Jul 31 2024, 3:41 PM] delaybeforesend: None
[Jul 31 2024, 3:41 PM] delayafterclose: 0.1
[Jul 31 2024, 3:41 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:41 PM] searcher: searcher_re:
[Jul 31 2024, 3:41 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:41 PM] [I 2024-07-31 14:41:23.528 ServerApp] AsyncIOLoopKernelRestarter: restarting kernel (1/5), new random ports
[Jul 31 2024, 3:41 PM] Traceback (most recent call last):
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:41 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:41 PM]     exec(code, run_globals)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:41 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:41 PM]     app.initialize(argv)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:41 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:41 PM]     self.init_kernel()
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:41 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:41 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:41 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:41 PM]     self.init_console()
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:41 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:41 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:41 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:41 PM]     return self.eof(e)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:41 PM]     raise exc
[Jul 31 2024, 3:41 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:41 PM] <pexpect.pty_spawn.spawn object at 0x7fe1c14b1a90>
[Jul 31 2024, 3:41 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:41 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:41 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:41 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:41 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:41 PM] match: None
[Jul 31 2024, 3:41 PM] match_index: None
[Jul 31 2024, 3:41 PM] exitstatus: None
[Jul 31 2024, 3:41 PM] flag_eof: True
[Jul 31 2024, 3:41 PM] pid: 12115
[Jul 31 2024, 3:41 PM] child_fd: 43
[Jul 31 2024, 3:41 PM] closed: False
[Jul 31 2024, 3:41 PM] timeout: 30
[Jul 31 2024, 3:41 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:41 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:41 PM] logfile_read: None
[Jul 31 2024, 3:41 PM] logfile_send: None
[Jul 31 2024, 3:41 PM] maxread: 2000
[Jul 31 2024, 3:41 PM] ignorecase: False
[Jul 31 2024, 3:41 PM] searchwindowsize: None
[Jul 31 2024, 3:41 PM] delaybeforesend: None
[Jul 31 2024, 3:41 PM] delayafterclose: 0.1
[Jul 31 2024, 3:41 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:41 PM] searcher: searcher_re:
[Jul 31 2024, 3:41 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:41 PM] [I 2024-07-31 14:41:26.546 ServerApp] AsyncIOLoopKernelRestarter: restarting kernel (2/5), new random ports
[Jul 31 2024, 3:41 PM] Traceback (most recent call last):
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:41 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:41 PM]     exec(code, run_globals)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:41 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:41 PM]     app.initialize(argv)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:41 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:41 PM]     self.init_kernel()
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:41 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:41 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:41 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:41 PM]     self.init_console()
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:41 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:41 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:41 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:41 PM]     return self.eof(e)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:41 PM]     raise exc
[Jul 31 2024, 3:41 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:41 PM] <pexpect.pty_spawn.spawn object at 0x7f25f86ec0a0>
[Jul 31 2024, 3:41 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:41 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:41 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:41 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:41 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:41 PM] match: None
[Jul 31 2024, 3:41 PM] match_index: None
[Jul 31 2024, 3:41 PM] exitstatus: None
[Jul 31 2024, 3:41 PM] flag_eof: True
[Jul 31 2024, 3:41 PM] pid: 12143
[Jul 31 2024, 3:41 PM] child_fd: 43
[Jul 31 2024, 3:41 PM] closed: False
[Jul 31 2024, 3:41 PM] timeout: 30
[Jul 31 2024, 3:41 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:41 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:41 PM] logfile_read: None
[Jul 31 2024, 3:41 PM] logfile_send: None
[Jul 31 2024, 3:41 PM] maxread: 2000
[Jul 31 2024, 3:41 PM] ignorecase: False
[Jul 31 2024, 3:41 PM] searchwindowsize: None
[Jul 31 2024, 3:41 PM] delaybeforesend: None
[Jul 31 2024, 3:41 PM] delayafterclose: 0.1
[Jul 31 2024, 3:41 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:41 PM] searcher: searcher_re:
[Jul 31 2024, 3:41 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:41 PM] [I 2024-07-31 14:41:51.544 ServerApp] AsyncIOLoopKernelRestarter: restarting kernel (3/5), new random ports
[Jul 31 2024, 3:41 PM] Traceback (most recent call last):
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:41 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:41 PM]     exec(code, run_globals)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:41 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:41 PM]     app.initialize(argv)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:41 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:41 PM]     self.init_kernel()
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:41 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:41 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:41 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:41 PM]     self.init_console()
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:41 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:41 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:41 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:41 PM]     return self.eof(e)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:41 PM]     raise exc
[Jul 31 2024, 3:41 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:41 PM] <pexpect.pty_spawn.spawn object at 0x7f358fb269a0>
[Jul 31 2024, 3:41 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:41 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:41 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:41 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:41 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:41 PM] match: None
[Jul 31 2024, 3:41 PM] match_index: None
[Jul 31 2024, 3:41 PM] exitstatus: None
[Jul 31 2024, 3:41 PM] flag_eof: True
[Jul 31 2024, 3:41 PM] pid: 12171
[Jul 31 2024, 3:41 PM] child_fd: 43
[Jul 31 2024, 3:41 PM] closed: False
[Jul 31 2024, 3:41 PM] timeout: 30
[Jul 31 2024, 3:41 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:41 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:41 PM] logfile_read: None
[Jul 31 2024, 3:41 PM] logfile_send: None
[Jul 31 2024, 3:41 PM] maxread: 2000
[Jul 31 2024, 3:41 PM] ignorecase: False
[Jul 31 2024, 3:41 PM] searchwindowsize: None
[Jul 31 2024, 3:41 PM] delaybeforesend: None
[Jul 31 2024, 3:41 PM] delayafterclose: 0.1
[Jul 31 2024, 3:41 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:41 PM] searcher: searcher_re:
[Jul 31 2024, 3:41 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:41 PM] INFO:jlab_dx.file_locker:Released lock for file Untitled_2024-7-19T17-19-31.ipynb (file-GpJB1g0J2Q1Vj9F2J86FXpZJ)
[Jul 31 2024, 3:41 PM] [I 2024-07-31 14:41:55.202 ServerApp] AsyncIOLoopKernelRestarter: restarting kernel (4/5), new random ports
[Jul 31 2024, 3:41 PM] Traceback (most recent call last):
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:41 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:41 PM]     exec(code, run_globals)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:41 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:41 PM]     app.initialize(argv)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:41 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:41 PM]     self.init_kernel()
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:41 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:41 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:41 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:41 PM]     self.init_console()
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:41 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:41 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:41 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:41 PM]     return self.eof(e)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:41 PM]     raise exc
[Jul 31 2024, 3:41 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:41 PM] <pexpect.pty_spawn.spawn object at 0x7f2b60898850>
[Jul 31 2024, 3:41 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:41 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:41 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:41 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:41 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:41 PM] match: None
[Jul 31 2024, 3:41 PM] match_index: None
[Jul 31 2024, 3:41 PM] exitstatus: None
[Jul 31 2024, 3:41 PM] flag_eof: True
[Jul 31 2024, 3:41 PM] pid: 12199
[Jul 31 2024, 3:41 PM] child_fd: 44
[Jul 31 2024, 3:41 PM] closed: False
[Jul 31 2024, 3:41 PM] timeout: 30
[Jul 31 2024, 3:41 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:41 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:41 PM] logfile_read: None
[Jul 31 2024, 3:41 PM] logfile_send: None
[Jul 31 2024, 3:41 PM] maxread: 2000
[Jul 31 2024, 3:41 PM] ignorecase: False
[Jul 31 2024, 3:41 PM] searchwindowsize: None
[Jul 31 2024, 3:41 PM] delaybeforesend: None
[Jul 31 2024, 3:41 PM] delayafterclose: 0.1
[Jul 31 2024, 3:41 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:41 PM] searcher: searcher_re:
[Jul 31 2024, 3:41 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:41 PM] [I 2024-07-31 14:41:58.221 ServerApp] AsyncIOLoopKernelRestarter: restarting kernel (5/5), new random ports
[Jul 31 2024, 3:41 PM] Traceback (most recent call last):
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:41 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:41 PM]     exec(code, run_globals)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:41 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:41 PM]     app.initialize(argv)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:41 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:41 PM]     self.init_kernel()
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:41 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:41 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:41 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:41 PM]     self.init_console()
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:41 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:41 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:41 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:41 PM]     return self.eof(e)
[Jul 31 2024, 3:41 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:41 PM]     raise exc
[Jul 31 2024, 3:41 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:41 PM] <pexpect.pty_spawn.spawn object at 0x7f93ae98f6a0>
[Jul 31 2024, 3:41 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:41 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:41 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:41 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:41 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:41 PM] match: None
[Jul 31 2024, 3:41 PM] match_index: None
[Jul 31 2024, 3:41 PM] exitstatus: None
[Jul 31 2024, 3:41 PM] flag_eof: True
[Jul 31 2024, 3:41 PM] pid: 12227
[Jul 31 2024, 3:41 PM] child_fd: 42
[Jul 31 2024, 3:41 PM] closed: False
[Jul 31 2024, 3:41 PM] timeout: 30
[Jul 31 2024, 3:41 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:41 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:41 PM] logfile_read: None
[Jul 31 2024, 3:41 PM] logfile_send: None
[Jul 31 2024, 3:41 PM] maxread: 2000
[Jul 31 2024, 3:41 PM] ignorecase: False
[Jul 31 2024, 3:41 PM] searchwindowsize: None
[Jul 31 2024, 3:41 PM] delaybeforesend: None
[Jul 31 2024, 3:41 PM] delayafterclose: 0.1
[Jul 31 2024, 3:41 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:41 PM] searcher: searcher_re:
[Jul 31 2024, 3:41 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:42 PM] [W 2024-07-31 14:42:01.239 ServerApp] AsyncIOLoopKernelRestarter: restart failed
[Jul 31 2024, 3:42 PM] [W 2024-07-31 14:42:01.239 ServerApp] Kernel 73251de9-d116-4d8a-b2b4-812c9f721942 died, removing from map.
[Jul 31 2024, 3:42 PM] [W 2024-07-31 14:42:43.144 ServerApp] Timeout waiting for kernel_info reply from 73251de9-d116-4d8a-b2b4-812c9f721942
[Jul 31 2024, 3:42 PM] [W 2024-07-31 14:42:43.145 ServerApp] 404 GET /api/kernels/73251de9-d116-4d8a-b2b4-812c9f721942/channels?session_id=9116aea0-06e0-4ce5-9bb7-9a359b5d8563 (10.0.3.1): Kernel does not exist: 73251de9-d116-4d8a-b2b4-812c9f721942
[Jul 31 2024, 3:43 PM] [I 2024-07-31 14:43:02.213 ServerApp] Kernel started: 41738a09-ad13-4f3b-b5b3-c2b278e6b38f
[Jul 31 2024, 3:43 PM] Traceback (most recent call last):
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:43 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:43 PM]     exec(code, run_globals)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:43 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:43 PM]     app.initialize(argv)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:43 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:43 PM]     self.init_kernel()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:43 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:43 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:43 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:43 PM]     self.init_console()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:43 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:43 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:43 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:43 PM]     return self.eof(e)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:43 PM]     raise exc
[Jul 31 2024, 3:43 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:43 PM] <pexpect.pty_spawn.spawn object at 0x7f9d48baa4c0>
[Jul 31 2024, 3:43 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:43 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:43 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:43 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:43 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] match: None
[Jul 31 2024, 3:43 PM] match_index: None
[Jul 31 2024, 3:43 PM] exitstatus: None
[Jul 31 2024, 3:43 PM] flag_eof: True
[Jul 31 2024, 3:43 PM] pid: 12255
[Jul 31 2024, 3:43 PM] child_fd: 43
[Jul 31 2024, 3:43 PM] closed: False
[Jul 31 2024, 3:43 PM] timeout: 30
[Jul 31 2024, 3:43 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:43 PM] logfile_read: None
[Jul 31 2024, 3:43 PM] logfile_send: None
[Jul 31 2024, 3:43 PM] maxread: 2000
[Jul 31 2024, 3:43 PM] ignorecase: False
[Jul 31 2024, 3:43 PM] searchwindowsize: None
[Jul 31 2024, 3:43 PM] delaybeforesend: None
[Jul 31 2024, 3:43 PM] delayafterclose: 0.1
[Jul 31 2024, 3:43 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:43 PM] searcher: searcher_re:
[Jul 31 2024, 3:43 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:43 PM] [I 2024-07-31 14:43:05.204 ServerApp] AsyncIOLoopKernelRestarter: restarting kernel (1/5), new random ports
[Jul 31 2024, 3:43 PM] Traceback (most recent call last):
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:43 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:43 PM]     exec(code, run_globals)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:43 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:43 PM]     app.initialize(argv)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:43 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:43 PM]     self.init_kernel()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:43 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:43 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:43 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:43 PM]     self.init_console()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:43 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:43 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:43 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:43 PM]     return self.eof(e)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:43 PM]     raise exc
[Jul 31 2024, 3:43 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:43 PM] <pexpect.pty_spawn.spawn object at 0x7f91c0bf9820>
[Jul 31 2024, 3:43 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:43 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:43 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:43 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:43 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] match: None
[Jul 31 2024, 3:43 PM] match_index: None
[Jul 31 2024, 3:43 PM] exitstatus: None
[Jul 31 2024, 3:43 PM] flag_eof: True
[Jul 31 2024, 3:43 PM] pid: 12283
[Jul 31 2024, 3:43 PM] child_fd: 43
[Jul 31 2024, 3:43 PM] closed: False
[Jul 31 2024, 3:43 PM] timeout: 30
[Jul 31 2024, 3:43 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:43 PM] logfile_read: None
[Jul 31 2024, 3:43 PM] logfile_send: None
[Jul 31 2024, 3:43 PM] maxread: 2000
[Jul 31 2024, 3:43 PM] ignorecase: False
[Jul 31 2024, 3:43 PM] searchwindowsize: None
[Jul 31 2024, 3:43 PM] delaybeforesend: None
[Jul 31 2024, 3:43 PM] delayafterclose: 0.1
[Jul 31 2024, 3:43 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:43 PM] searcher: searcher_re:
[Jul 31 2024, 3:43 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:43 PM] [I 2024-07-31 14:43:08.222 ServerApp] AsyncIOLoopKernelRestarter: restarting kernel (2/5), new random ports
[Jul 31 2024, 3:43 PM] Traceback (most recent call last):
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:43 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:43 PM]     exec(code, run_globals)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:43 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:43 PM]     app.initialize(argv)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:43 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:43 PM]     self.init_kernel()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:43 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:43 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:43 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:43 PM]     self.init_console()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:43 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:43 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:43 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:43 PM]     return self.eof(e)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:43 PM]     raise exc
[Jul 31 2024, 3:43 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:43 PM] <pexpect.pty_spawn.spawn object at 0x7fb3ff39e0d0>
[Jul 31 2024, 3:43 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:43 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:43 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:43 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:43 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] match: None
[Jul 31 2024, 3:43 PM] match_index: None
[Jul 31 2024, 3:43 PM] exitstatus: None
[Jul 31 2024, 3:43 PM] flag_eof: True
[Jul 31 2024, 3:43 PM] pid: 12311
[Jul 31 2024, 3:43 PM] child_fd: 42
[Jul 31 2024, 3:43 PM] closed: False
[Jul 31 2024, 3:43 PM] timeout: 30
[Jul 31 2024, 3:43 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:43 PM] logfile_read: None
[Jul 31 2024, 3:43 PM] logfile_send: None
[Jul 31 2024, 3:43 PM] maxread: 2000
[Jul 31 2024, 3:43 PM] ignorecase: False
[Jul 31 2024, 3:43 PM] searchwindowsize: None
[Jul 31 2024, 3:43 PM] delaybeforesend: None
[Jul 31 2024, 3:43 PM] delayafterclose: 0.1
[Jul 31 2024, 3:43 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:43 PM] searcher: searcher_re:
[Jul 31 2024, 3:43 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:43 PM] [I 2024-07-31 14:43:11.242 ServerApp] AsyncIOLoopKernelRestarter: restarting kernel (3/5), new random ports
[Jul 31 2024, 3:43 PM] Traceback (most recent call last):
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:43 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:43 PM]     exec(code, run_globals)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:43 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:43 PM]     app.initialize(argv)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:43 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:43 PM]     self.init_kernel()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:43 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:43 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:43 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:43 PM]     self.init_console()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:43 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:43 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:43 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:43 PM]     return self.eof(e)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:43 PM]     raise exc
[Jul 31 2024, 3:43 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:43 PM] <pexpect.pty_spawn.spawn object at 0x7f001c8e95e0>
[Jul 31 2024, 3:43 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:43 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:43 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:43 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:43 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] match: None
[Jul 31 2024, 3:43 PM] match_index: None
[Jul 31 2024, 3:43 PM] exitstatus: None
[Jul 31 2024, 3:43 PM] flag_eof: True
[Jul 31 2024, 3:43 PM] pid: 12339
[Jul 31 2024, 3:43 PM] child_fd: 42
[Jul 31 2024, 3:43 PM] closed: False
[Jul 31 2024, 3:43 PM] timeout: 30
[Jul 31 2024, 3:43 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:43 PM] logfile_read: None
[Jul 31 2024, 3:43 PM] logfile_send: None
[Jul 31 2024, 3:43 PM] maxread: 2000
[Jul 31 2024, 3:43 PM] ignorecase: False
[Jul 31 2024, 3:43 PM] searchwindowsize: None
[Jul 31 2024, 3:43 PM] delaybeforesend: None
[Jul 31 2024, 3:43 PM] delayafterclose: 0.1
[Jul 31 2024, 3:43 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:43 PM] searcher: searcher_re:
[Jul 31 2024, 3:43 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:43 PM] [I 2024-07-31 14:43:14.259 ServerApp] AsyncIOLoopKernelRestarter: restarting kernel (4/5), new random ports
[Jul 31 2024, 3:43 PM] Traceback (most recent call last):
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:43 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:43 PM]     exec(code, run_globals)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:43 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:43 PM]     app.initialize(argv)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:43 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:43 PM]     self.init_kernel()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:43 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:43 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:43 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:43 PM]     self.init_console()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:43 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:43 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:43 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:43 PM]     return self.eof(e)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:43 PM]     raise exc
[Jul 31 2024, 3:43 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:43 PM] <pexpect.pty_spawn.spawn object at 0x7fb85b346250>
[Jul 31 2024, 3:43 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:43 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:43 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:43 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:43 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] match: None
[Jul 31 2024, 3:43 PM] match_index: None
[Jul 31 2024, 3:43 PM] exitstatus: None
[Jul 31 2024, 3:43 PM] flag_eof: True
[Jul 31 2024, 3:43 PM] pid: 12367
[Jul 31 2024, 3:43 PM] child_fd: 45
[Jul 31 2024, 3:43 PM] closed: False
[Jul 31 2024, 3:43 PM] timeout: 30
[Jul 31 2024, 3:43 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:43 PM] logfile_read: None
[Jul 31 2024, 3:43 PM] logfile_send: None
[Jul 31 2024, 3:43 PM] maxread: 2000
[Jul 31 2024, 3:43 PM] ignorecase: False
[Jul 31 2024, 3:43 PM] searchwindowsize: None
[Jul 31 2024, 3:43 PM] delaybeforesend: None
[Jul 31 2024, 3:43 PM] delayafterclose: 0.1
[Jul 31 2024, 3:43 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:43 PM] searcher: searcher_re:
[Jul 31 2024, 3:43 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:43 PM] [I 2024-07-31 14:43:17.276 ServerApp] AsyncIOLoopKernelRestarter: restarting kernel (5/5), new random ports
[Jul 31 2024, 3:43 PM] Traceback (most recent call last):
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:43 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:43 PM]     exec(code, run_globals)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:43 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:43 PM]     app.initialize(argv)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:43 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:43 PM]     self.init_kernel()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:43 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:43 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:43 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:43 PM]     self.init_console()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:43 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:43 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:43 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:43 PM]     return self.eof(e)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:43 PM]     raise exc
[Jul 31 2024, 3:43 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:43 PM] <pexpect.pty_spawn.spawn object at 0x7f711aa659a0>
[Jul 31 2024, 3:43 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:43 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:43 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:43 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:43 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] match: None
[Jul 31 2024, 3:43 PM] match_index: None
[Jul 31 2024, 3:43 PM] exitstatus: None
[Jul 31 2024, 3:43 PM] flag_eof: True
[Jul 31 2024, 3:43 PM] pid: 12395
[Jul 31 2024, 3:43 PM] child_fd: 42
[Jul 31 2024, 3:43 PM] closed: False
[Jul 31 2024, 3:43 PM] timeout: 30
[Jul 31 2024, 3:43 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:43 PM] logfile_read: None
[Jul 31 2024, 3:43 PM] logfile_send: None
[Jul 31 2024, 3:43 PM] maxread: 2000
[Jul 31 2024, 3:43 PM] ignorecase: False
[Jul 31 2024, 3:43 PM] searchwindowsize: None
[Jul 31 2024, 3:43 PM] delaybeforesend: None
[Jul 31 2024, 3:43 PM] delayafterclose: 0.1
[Jul 31 2024, 3:43 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:43 PM] searcher: searcher_re:
[Jul 31 2024, 3:43 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:43 PM] [W 2024-07-31 14:43:20.294 ServerApp] AsyncIOLoopKernelRestarter: restart failed
[Jul 31 2024, 3:43 PM] [W 2024-07-31 14:43:20.294 ServerApp] Kernel 41738a09-ad13-4f3b-b5b3-c2b278e6b38f died, removing from map.
[Jul 31 2024, 3:43 PM] [I 2024-07-31 14:43:20.436 ServerApp] Saving file at /Untitled.ipynb
[Jul 31 2024, 3:43 PM] [I 2024-07-31 14:43:30.028 ServerApp] Kernel started: 36d15be3-67c6-4a83-b261-f9e0a78c923c
[Jul 31 2024, 3:43 PM] Traceback (most recent call last):
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:43 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:43 PM]     exec(code, run_globals)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:43 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:43 PM]     app.initialize(argv)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:43 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:43 PM]     self.init_kernel()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:43 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:43 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:43 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:43 PM]     self.init_console()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:43 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:43 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:43 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:43 PM]     return self.eof(e)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:43 PM]     raise exc
[Jul 31 2024, 3:43 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:43 PM] <pexpect.pty_spawn.spawn object at 0x7efdeb5e1070>
[Jul 31 2024, 3:43 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:43 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:43 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:43 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:43 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] match: None
[Jul 31 2024, 3:43 PM] match_index: None
[Jul 31 2024, 3:43 PM] exitstatus: None
[Jul 31 2024, 3:43 PM] flag_eof: True
[Jul 31 2024, 3:43 PM] pid: 12423
[Jul 31 2024, 3:43 PM] child_fd: 42
[Jul 31 2024, 3:43 PM] closed: False
[Jul 31 2024, 3:43 PM] timeout: 30
[Jul 31 2024, 3:43 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:43 PM] logfile_read: None
[Jul 31 2024, 3:43 PM] logfile_send: None
[Jul 31 2024, 3:43 PM] maxread: 2000
[Jul 31 2024, 3:43 PM] ignorecase: False
[Jul 31 2024, 3:43 PM] searchwindowsize: None
[Jul 31 2024, 3:43 PM] delaybeforesend: None
[Jul 31 2024, 3:43 PM] delayafterclose: 0.1
[Jul 31 2024, 3:43 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:43 PM] searcher: searcher_re:
[Jul 31 2024, 3:43 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:43 PM] [I 2024-07-31 14:43:33.018 ServerApp] AsyncIOLoopKernelRestarter: restarting kernel (1/5), new random ports
[Jul 31 2024, 3:43 PM] Traceback (most recent call last):
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:43 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:43 PM]     exec(code, run_globals)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:43 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:43 PM]     app.initialize(argv)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:43 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:43 PM]     self.init_kernel()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:43 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:43 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:43 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:43 PM]     self.init_console()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:43 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:43 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:43 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:43 PM]     return self.eof(e)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:43 PM]     raise exc
[Jul 31 2024, 3:43 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:43 PM] <pexpect.pty_spawn.spawn object at 0x7fb7f9a54310>
[Jul 31 2024, 3:43 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:43 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:43 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:43 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:43 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] match: None
[Jul 31 2024, 3:43 PM] match_index: None
[Jul 31 2024, 3:43 PM] exitstatus: None
[Jul 31 2024, 3:43 PM] flag_eof: True
[Jul 31 2024, 3:43 PM] pid: 12451
[Jul 31 2024, 3:43 PM] child_fd: 43
[Jul 31 2024, 3:43 PM] closed: False
[Jul 31 2024, 3:43 PM] timeout: 30
[Jul 31 2024, 3:43 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:43 PM] logfile_read: None
[Jul 31 2024, 3:43 PM] logfile_send: None
[Jul 31 2024, 3:43 PM] maxread: 2000
[Jul 31 2024, 3:43 PM] ignorecase: False
[Jul 31 2024, 3:43 PM] searchwindowsize: None
[Jul 31 2024, 3:43 PM] delaybeforesend: None
[Jul 31 2024, 3:43 PM] delayafterclose: 0.1
[Jul 31 2024, 3:43 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:43 PM] searcher: searcher_re:
[Jul 31 2024, 3:43 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:43 PM] [I 2024-07-31 14:43:36.037 ServerApp] AsyncIOLoopKernelRestarter: restarting kernel (2/5), new random ports
[Jul 31 2024, 3:43 PM] Traceback (most recent call last):
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:43 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:43 PM]     exec(code, run_globals)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:43 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:43 PM]     app.initialize(argv)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:43 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:43 PM]     self.init_kernel()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:43 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:43 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:43 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:43 PM]     self.init_console()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:43 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:43 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:43 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:43 PM]     return self.eof(e)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:43 PM]     raise exc
[Jul 31 2024, 3:43 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:43 PM] <pexpect.pty_spawn.spawn object at 0x7f0c7077c460>
[Jul 31 2024, 3:43 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:43 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:43 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:43 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:43 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] match: None
[Jul 31 2024, 3:43 PM] match_index: None
[Jul 31 2024, 3:43 PM] exitstatus: None
[Jul 31 2024, 3:43 PM] flag_eof: True
[Jul 31 2024, 3:43 PM] pid: 12479
[Jul 31 2024, 3:43 PM] child_fd: 44
[Jul 31 2024, 3:43 PM] closed: False
[Jul 31 2024, 3:43 PM] timeout: 30
[Jul 31 2024, 3:43 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:43 PM] logfile_read: None
[Jul 31 2024, 3:43 PM] logfile_send: None
[Jul 31 2024, 3:43 PM] maxread: 2000
[Jul 31 2024, 3:43 PM] ignorecase: False
[Jul 31 2024, 3:43 PM] searchwindowsize: None
[Jul 31 2024, 3:43 PM] delaybeforesend: None
[Jul 31 2024, 3:43 PM] delayafterclose: 0.1
[Jul 31 2024, 3:43 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:43 PM] searcher: searcher_re:
[Jul 31 2024, 3:43 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:43 PM] [I 2024-07-31 14:43:39.056 ServerApp] AsyncIOLoopKernelRestarter: restarting kernel (3/5), new random ports
[Jul 31 2024, 3:43 PM] Traceback (most recent call last):
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:43 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:43 PM]     exec(code, run_globals)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:43 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:43 PM]     app.initialize(argv)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:43 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:43 PM]     self.init_kernel()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:43 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:43 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:43 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:43 PM]     self.init_console()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:43 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:43 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:43 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:43 PM]     return self.eof(e)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:43 PM]     raise exc
[Jul 31 2024, 3:43 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:43 PM] <pexpect.pty_spawn.spawn object at 0x7f47c176f370>
[Jul 31 2024, 3:43 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:43 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:43 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:43 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:43 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] match: None
[Jul 31 2024, 3:43 PM] match_index: None
[Jul 31 2024, 3:43 PM] exitstatus: None
[Jul 31 2024, 3:43 PM] flag_eof: True
[Jul 31 2024, 3:43 PM] pid: 12507
[Jul 31 2024, 3:43 PM] child_fd: 42
[Jul 31 2024, 3:43 PM] closed: False
[Jul 31 2024, 3:43 PM] timeout: 30
[Jul 31 2024, 3:43 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:43 PM] logfile_read: None
[Jul 31 2024, 3:43 PM] logfile_send: None
[Jul 31 2024, 3:43 PM] maxread: 2000
[Jul 31 2024, 3:43 PM] ignorecase: False
[Jul 31 2024, 3:43 PM] searchwindowsize: None
[Jul 31 2024, 3:43 PM] delaybeforesend: None
[Jul 31 2024, 3:43 PM] delayafterclose: 0.1
[Jul 31 2024, 3:43 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:43 PM] searcher: searcher_re:
[Jul 31 2024, 3:43 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:43 PM] [I 2024-07-31 14:43:42.074 ServerApp] AsyncIOLoopKernelRestarter: restarting kernel (4/5), new random ports
[Jul 31 2024, 3:43 PM] Traceback (most recent call last):
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:43 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:43 PM]     exec(code, run_globals)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:43 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:43 PM]     app.initialize(argv)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:43 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:43 PM]     self.init_kernel()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:43 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:43 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:43 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:43 PM]     self.init_console()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:43 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:43 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:43 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:43 PM]     return self.eof(e)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:43 PM]     raise exc
[Jul 31 2024, 3:43 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:43 PM] <pexpect.pty_spawn.spawn object at 0x7f27ac78f610>
[Jul 31 2024, 3:43 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:43 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:43 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:43 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:43 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] match: None
[Jul 31 2024, 3:43 PM] match_index: None
[Jul 31 2024, 3:43 PM] exitstatus: None
[Jul 31 2024, 3:43 PM] flag_eof: True
[Jul 31 2024, 3:43 PM] pid: 12535
[Jul 31 2024, 3:43 PM] child_fd: 42
[Jul 31 2024, 3:43 PM] closed: False
[Jul 31 2024, 3:43 PM] timeout: 30
[Jul 31 2024, 3:43 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:43 PM] logfile_read: None
[Jul 31 2024, 3:43 PM] logfile_send: None
[Jul 31 2024, 3:43 PM] maxread: 2000
[Jul 31 2024, 3:43 PM] ignorecase: False
[Jul 31 2024, 3:43 PM] searchwindowsize: None
[Jul 31 2024, 3:43 PM] delaybeforesend: None
[Jul 31 2024, 3:43 PM] delayafterclose: 0.1
[Jul 31 2024, 3:43 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:43 PM] searcher: searcher_re:
[Jul 31 2024, 3:43 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:43 PM] [I 2024-07-31 14:43:45.093 ServerApp] AsyncIOLoopKernelRestarter: restarting kernel (5/5), new random ports
[Jul 31 2024, 3:43 PM] Traceback (most recent call last):
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
[Jul 31 2024, 3:43 PM]     return _run_code(code, main_globals, None,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
[Jul 31 2024, 3:43 PM]     exec(code, run_globals)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/__main__.py", line 4, in <module>
[Jul 31 2024, 3:43 PM]     IPKernelApp.launch_instance(kernel_class=StataKernel)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1042, in launch_instance
[Jul 31 2024, 3:43 PM]     app.initialize(argv)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 113, in inner
[Jul 31 2024, 3:43 PM]     return method(app, *args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 692, in initialize
[Jul 31 2024, 3:43 PM]     self.init_kernel()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/ipykernel/kernelapp.py", line 540, in init_kernel
[Jul 31 2024, 3:43 PM]     kernel = kernel_factory(
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/traitlets/config/configurable.py", line 551, in instance
[Jul 31 2024, 3:43 PM]     inst = cls(*args, **kwargs)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/kernel.py", line 71, in __init__
[Jul 31 2024, 3:43 PM]     self.stata = StataSession(self)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 94, in __init__
[Jul 31 2024, 3:43 PM]     self.init_console()
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/stata_kernel/stata_session.py", line 190, in init_console
[Jul 31 2024, 3:43 PM]     self.child.expect(self.prompt, timeout=0.2)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 354, in expect
[Jul 31 2024, 3:43 PM]     return self.expect_list(compiled_pattern_list,
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/spawnbase.py", line 383, in expect_list
[Jul 31 2024, 3:43 PM]     return exp.expect_loop(timeout)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 179, in expect_loop
[Jul 31 2024, 3:43 PM]     return self.eof(e)
[Jul 31 2024, 3:43 PM]   File "/opt/conda/lib/python3.9/site-packages/pexpect/expect.py", line 122, in eof
[Jul 31 2024, 3:43 PM]     raise exc
[Jul 31 2024, 3:43 PM] pexpect.exceptions.EOF: End Of File (EOF). Exception style platform.
[Jul 31 2024, 3:43 PM] <pexpect.pty_spawn.spawn object at 0x7f51c6396640>
[Jul 31 2024, 3:43 PM] command: /usr/local/stata16/stata-mp
[Jul 31 2024, 3:43 PM] args: [b'/usr/local/stata16/stata-mp']
[Jul 31 2024, 3:43 PM] buffer (last 100 chars): ''
[Jul 31 2024, 3:43 PM] before (last 100 chars): 'License not applicable to this Stata\r\n'
[Jul 31 2024, 3:43 PM] after: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] match: None
[Jul 31 2024, 3:43 PM] match_index: None
[Jul 31 2024, 3:43 PM] exitstatus: None
[Jul 31 2024, 3:43 PM] flag_eof: True
[Jul 31 2024, 3:43 PM] pid: 12563
[Jul 31 2024, 3:43 PM] child_fd: 44
[Jul 31 2024, 3:43 PM] closed: False
[Jul 31 2024, 3:43 PM] timeout: 30
[Jul 31 2024, 3:43 PM] delimiter: <class 'pexpect.exceptions.EOF'>
[Jul 31 2024, 3:43 PM] logfile: <_io.TextIOWrapper name='/home/dnanexus/.stata_kernel_cache/console_debug.log' mode='w' encoding='utf-8'>
[Jul 31 2024, 3:43 PM] logfile_read: None
[Jul 31 2024, 3:43 PM] logfile_send: None
[Jul 31 2024, 3:43 PM] maxread: 2000
[Jul 31 2024, 3:43 PM] ignorecase: False
[Jul 31 2024, 3:43 PM] searchwindowsize: None
[Jul 31 2024, 3:43 PM] delaybeforesend: None
[Jul 31 2024, 3:43 PM] delayafterclose: 0.1
[Jul 31 2024, 3:43 PM] delayafterterminate: 0.1
[Jul 31 2024, 3:43 PM] searcher: searcher_re:
[Jul 31 2024, 3:43 PM]     0: re.compile('\\r\\n\\. ')
[Jul 31 2024, 3:43 PM] [W 2024-07-31 14:43:48.111 ServerApp] AsyncIOLoopKernelRestarter: restart failed
[Jul 31 2024, 3:43 PM] [W 2024-07-31 14:43:48.111 ServerApp] Kernel 36d15be3-67c6-4a83-b261-f9e0a78c923c died, removing from map.
[Jul 31 2024, 3:44 PM] [W 2024-07-31 14:44:02.535 ServerApp] Timeout waiting for kernel_info reply from 41738a09-ad13-4f3b-b5b3-c2b278e6b38f
[Jul 31 2024, 3:44 PM] [W 2024-07-31 14:44:02.536 ServerApp] 404 GET /api/kernels/41738a09-ad13-4f3b-b5b3-c2b278e6b38f/channels?session_id=469290fe-7398-4941-a8bd-d2045013b2d2 (10.0.3.1): Kernel does not exist: 41738a09-ad13-4f3b-b5b3-c2b278e6b38f
[Jul 31 2024, 3:44 PM] [W 2024-07-31 14:44:30.130 ServerApp] Timeout waiting for kernel_info reply from 36d15be3-67c6-4a83-b261-f9e0a78c923c
[Jul 31 2024, 3:44 PM] [W 2024-07-31 14:44:30.131 ServerApp] 404 GET /api/kernels/36d15be3-67c6-4a83-b261-f9e0a78c923c/channels?session_id=15335bb0-3f46-4aa7-88ef-58183263cf9f (10.0.3.1): Kernel does not exist: 36d15be3-67c6-4a83-b261-f9e0a78c923c
[Jul 31 2024, 3:45 PM] CPU: 3% (16 cores) * Memory: 1180/31380MB * Storage: 9/1604GB * Net: 4↓/0↑MBps
[Jul 31 2024, 3:45 PM] [I 2024-07-31 14:45:21.045 ServerApp] Saving file at /Untitled.ipynb