WGS extracting region error

Yevheniya Sharhorodska

Dear community,
I am trying to extract region from the vcf files WGS data using Swiss Army Knife and got some error. Could you suggest how to fix it, please.

bcftools view -r "6:39048781-39091303" -Oz -o extracted_region.vcf.gz ukb23374_c6_b*.vcf.gz && dx upload extracted_region.vcf


[E::idx_find_and_load] Could not retrieve index file for 'ukb23374_c6_b0_v1.vcf.gz'

Failed to read from ukb23374_c6_b0_v1.vcf.gz: could not load index
Many thanks!

Comments

1 comment

Date Votes
  • Comment author
    Chiao-Feng Lin

    The error message points out “Could not retrieve index file for ‘ukb23374_c6_b0_v1.vcf.gz’”. You'd need to upload the corresponding index files (.tbi). for instance ukb23374_c6_b0_v1.vcf.gz.tbi

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