DRAGEN CNV and SV: is population level file avaliable?
Hi all，
Currently, in the DRAGEN WGS folder, there are only individual-level gvcf available for SV and CNV, whereas population-level vcf, bgen, and plink files are available for SNV and indel. I'm wondering if the same population-level file (regardless of format) is also available for CNV and SV. From the DRAGEN pipeline, it seems that population-level VCF for all types of variants is simultaneously generated at one stop (taking fastq as input), and it seems that we could not generate it from individual gvcf using existing tools on UKB-RAP.
Thank you very much for your help.
Best,
Weichen Song
Comments
3 comments
Following this because i'm interested in the same question but for the STR data.
Did you ever get an answer about this?
Would also be interested in this.
Please sign in to leave a comment.