Data enquiries

UKB-RAP, Showcase and data baskets

Is phased vcf files available for all WES samples? (450K)
- Former User of DNAx Community_44
- 19 January 2023 00:00
- 0 votes
- 5 comments
I would like to access phenotype data from within a WDL task using a python script. How do I localize the database file as an input to the task? I'm getting a wrong type error.
- Former User of DNAx Community_98
- 17 January 2023 00:00
- 0 votes
- 3 comments
Webinar Feb 1: Multi-Modal Data Integration Roundtable: Efficiently Analyze UK Biobank?s Diverse Data Types
- Brenton Pyle
- 12 January 2023 00:00
- 0 votes
- 1 comment
New Data Release: Genomics England and TOPMed Imputation Data
- Brenton Pyle
- 12 January 2023 00:00
- 0 votes
- 4 comments
Where can I find information about the newest WGS and WES released data? I've searched in the showcase for each variable in the notes section but it says that the data is restricted. Thanks Diana
- Permanently deleted user
- 09 January 2023 00:00
- 0 votes
- 3 comments
When can we know the carriers of clonal haematopoiesis of indeterminate potential (CHIP)?
- Former User of DNAx Community_27
- 27 December 2022 00:00
- 0 votes
- 2 comments
How can I use returned dataset on UKB-RAP
- Chai Fungtammasan
- 15 December 2022 00:00
- 0 votes
- 1 comment
How do I put the subset of data from the Cohort Browser into the RStudio?
- Chai Fungtammasan
- 15 December 2022 00:00
- 0 votes
- 1 comment
Can I package the whole workflow into a Docker?
- Chai Fungtammasan
- 15 December 2022 00:00
- 0 votes
- 1 comment
Can I use UKB-RAP with non-UKB data?
- Chai Fungtammasan
- 15 December 2022 00:00
- 0 votes
- 1 comment
How do I extract certain variant from p.vcf.gz
- Chai Fungtammasan
- 15 December 2022 00:00
- 0 votes
- 1 comment
How to read the UKB exome data from Python?
- Former User of DNAx Community_97
- 13 December 2022 00:00
- 0 votes
- 6 comments
Would it be possible to get some information for the Liver MRI? Some details about the different protocols of images available and some examples of tools that work for Liver mRI would be expressly helpful.
- Brenton Pyle
- 06 December 2022 00:00
- 0 votes
- 1 comment
Where is project data when using Cloud Workstation app?
- Former User of DNAx Community_98
- 02 December 2022 00:00
- 0 votes
- 1 comment
Hello guys: Any idea of the best way to select a cancer-free cohort to compare with cancer patients? I have tried different terms (e.g., non-cancer, cancer-free, etc.) but no good options for any of these.
- Former User of DNAx Community_77
- 17 November 2022 00:00
- 0 votes
- 2 comments
Where can I find detailed specifications of the available instance types? I am particular interested in the GPU instances. I would like to know the GPU model, memory, etc. for each instance. Thanks!
- Permanently deleted user
- 11 November 2022 00:00
- 0 votes
- 2 comments
How can you request an increased job limit?
- Former User of DNAx Community_47
- 10 November 2022 00:00
- 0 votes
- 1 comment
I am looking for accelerometer sleep related derived data, particularly SD of accelerometer -measured sleep duration and sleep-onset timing across 7 nights. I was wondering if there are any return datasets that contain these variables.
- Former User of DNAx Community_32
- 06 November 2022 00:00
- 0 votes
- 6 comments
We are downloading the raw accelerometry data (p90001) from physical activity measurements. However, the raw data in the ?activity? folder only showed 50000 items, and the other half items can not been seen or downloaded. How we can solve this?
- Former User of DNAx Community_90
- 03 November 2022 00:00
- 0 votes
- 2 comments
Is it possible to ensure VCF indices (and other secondary files) are localized to the same directory in WDL?
- Former User of DNAx Community_18
- 02 November 2022 00:00
- 0 votes
- 2 comments
What should the genotype prefix of bgen be for regenie burden test step 2?
- Former User of DNAx Community_52
- 19 October 2022 00:00
- 0 votes
- 1 comment
Table exporter with all fields?
- Former User of DNAx Community_29
- 18 October 2022 00:00
- 0 votes
- 7 comments
I am looking for NMR metabolites in UKB RAP phenotypes. I have a few questions: 1.) May I know how many NMR metabolites are in UKB RAP? 2.) Can you help how to find all metabolites? 3.) What QC steps generally were followed?
- Former User of DNAx Community_6
- 14 October 2022 00:00
- 0 votes
- 5 comments
dxcompile compile errors
- Former User of DNAx Community_51
- 14 October 2022 00:00
- 0 votes
- 1 comment
Hello, I am trying to generate phenotypes with Time to Events for the survival analysis I want to conduct. Did anyone generate these before if so Please do let me know how to do it. Thank you so much for the help..
- Former User of DNAx Community_6
- 14 October 2022 00:00
- 1 vote
- 3 comments
Where does saved data go on a Jupyter spark cluster?
- Former User of DNAx Community_47
- 07 October 2022 00:00
- 0 votes
- 1 comment
I am wondering if there is any way/software on DNAnexus platform to call somatic mutations on UKB data?
- Former User of DNAx Community_19
- 05 October 2022 00:00
- 0 votes
- 32 comments
200K WGS pVCF on RAP
- Permanently deleted user
- 27 September 2022 00:00
- 0 votes
- 7 comments
We wanted to do regression analysis on a subpopulation of 10,000 UK Biobank participants for 12 imputed SNPs on the RAP platform. It would be very helpful if you could guide us on how to proceed with the analysis on the RAP platform.
- Former User of DNAx Community_93
- 16 September 2022 00:00
- 0 votes
- 10 comments
Is it posible obtain a Cohort with all the Pathogenic Variants in a gene?
- Former User of DNAx Community_2
- 26 August 2022 00:00
- 0 votes
- 3 comments

Didn't find what you were looking for?

New post