Data enquiries
UKB-RAP, Showcase and data baskets
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Hi, Can you please tell me if UKBB has and shares mitochondrial DNA sequence of participants? As a researcher in a private company, am I allowed to ask for the data? And how long does it take from the data request to access to data? Thank you very much.
- Former User of DNAx Community_81
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How do I create a specific cohort of particular phenotypes (e.g Participants with AML)?
- Former User of DNAx Community_2
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Hello. Do you, or anyone in the team, know if UKB now have access to all the GP records of the second half of participants in England (first half have been linked since 2016). If UKB do not have access, is there a proposed date when they will? Best wishes
- Former User of DNAx Community_76
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Does the UK Biobank provides access to individual genomes/proteomes?
- Former User of DNAx Community_50
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Is it possible to perform a Burden Test using a defined set of filtered variants (in a pVCF) to check for association on phenotypic expression?
- Permanently deleted user
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Does anyone know why I keep getting this message on the cohort browser: 'An error occured when loading cohort count. Please try again later.'
- Former User of DNAx Community_37
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Webinar Aug 25: UK Biobank Research Analysis Platform Overview
- Brenton Pyle
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UK Biobank Cohort Update with Dataset Refresh
- Permanently deleted user
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Is there a way to designate exclusions of participants whose genetic sex (DF: 22001) does not match their reported sex (DF: 31) within the cohort browser?
- Permanently deleted user
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Not able to view data for all chromosomes on IGV
- Former User of DNAx Community_73
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Have questions about the 200k WGS Joint Variant Call Data Release? Ask them here!
- Brenton Pyle
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What about something as simple as retrieving the file names (i.e., as would be done with ls or find). Do these also need to be sent through a dx run request? What about visualizing the output (i.e., cat, less..)?
- Brenton Pyle
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Questions about data in gp_scripts table from UKB
- Former User of DNAx Community_62
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Is ?project? the literal name of this particular project, or it would be ?project? regardless of the actual project name?
- Brenton Pyle
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Is it useful to convert .nii.gz files to .nii - and what is the difference between the two formats?
- Brenton Pyle
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Would someone with RAP experience working on annotating VCF files for loss-of-function variants be willing to connect and offer tips/advice? I am new to the field and am feeling rather overwhelmed!
- Permanently deleted user
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Reading data into RStudio on DNA Nexus
- Former User of DNAx Community_63
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We are interested in exploring the raw accelerometry data (p90001) from physical activity measurements. This data exists inside 'Bulk' folder within our project as files with '.cwa' file extension. How can we open these '.cwa' files in UK-RAP platform?
- Former User of DNAx Community_96
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Making PHESANT compatible dataset from participant table
- Former User of DNAx Community_65
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In the Swiss Army Knife -iin parameter you can specify a whole folder, or do you need to list every single file one by one?
- Brenton Pyle
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UK Biobank Project Data Update Clarification
- Permanently deleted user
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Does the EID in the main file matches with the EID in UKB RAP for the same application?
- Former User of DNAx Community_39
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How can we download the "return" associated with a publication?
- Permanently deleted user
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Is HLA imputation available on RAP?
- Permanently deleted user
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Is there a way to find the record censoring dates for a particular data release version?
- Former User of DNAx Community_57
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Is it possible to define a cohort using Cohort Browser that has a set of inpatient ICD9/ICD10 OR death ICD9/ICD10 codes? So far I am only able to define a cohort with a set of inpatient ICD9/ICD10 codes WITH death ICD9/ICD10 codes.
- Former User of DNAx Community_46
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Webinar Mar 3: UK Biobank Research Analysis Platform Overview
- Brenton Pyle
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Announcing our First Ask Me Anything Sessions Hi folks! My name is Ben Busby and I am a Computational Biologist who loves solving complex biomedical data problems. In a couple weeks, I?m hosting our very live first Q&A here in the Community!
- Ben Busby
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What kind of data are you allowed to download? Are you allowed to download any individual-level genetic data? What about summary statistics?
- Former User of DNAx Community_17
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I have dispensed an project but not all the data I am expecting is there
- Permanently deleted user
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