Rachael W
UKB Community team
Data Analyst
Comments
Recent activity by Rachael W
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Hi Federica,Method 3 - using your saved cohort and Table Exporter tool to export a whole entity Select Tools, Tools Library, Table Exporter [Install if not already done], RunSelect location for out...
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- 3 votes
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Hi Courtney and Shengan,Field 191 date lost to follow up will only ever be relevant to a few participants, as it does not include those participants for whom UKB has received notification of death ...
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- 3 votes
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The proteomics data is in Cost Tier d2 o2 s2, see Showcase field 30900, https://biobank.ndph.ox.ac.uk/showcase/field.cgi?id=30900, The NMR metabolomics data is in Cost Tier d2 o1 s2, see Showcas...
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- 2 votes
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There is a Showcase Resource 3543 which has the field numbers and names for all 249 metabolites. To use it on the RAP, you would need to add p to the field number, and suffixes _i0 and i1. For exa...
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- 2 votes
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The dispense system is very busy at the moment, as many researchers want to receive the new V20 data. Please see https://community.ukbiobank.ac.uk/hc/en-gb/community/posts/32331973761821-Dispense-...
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- 1 vote
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Hi Hayley,from the error message it looks like you might be running out of memory. I suggest you try using a larger worker instance for RStudio, which can be set as you start RStudio, like thisWhe...
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- Edited
- 1 vote
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Hi Michael,the cohort browser is based on the Whole Exome Sequence (WES) data. It does include the APOE SNPs. Please note that the WES data uses GRCh38 reference genome, whereas the genotype calls ...
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- 1 vote
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There has been a major UK Biobank policy change, and data can no longer be downloaded. Researchers requiring new data will need to perform their analysis within the UKB cloud Research Analysis Pl...
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- 0 votes
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Hi Amy, I think someone else had this issue and the problem turned out to be the new line characters.Different operating systems use different characters to mean “new line”, so if you created your ...
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- 2 votes
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Hi, I am not a geneticist, so this might not be relevant, but I notice a typo in the file name:files_tp_merge.txt which I think should be files_to_merge.txt .If you run just the first part, can y...
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- 1 vote