Rachael W
UKB Community team
Data Analyst
Comments
Recent activity by Rachael W
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When did you last refresh your data on the RAP? The OMOP data is new for the latest RAP version, so the copy of the data that is in your project area might not have it yet.
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These links might help.https://enkre.net/cgi-bin/code/bgen/wiki/?name=BGEN+in+the+UK+Biobankhttps://www.well.ox.ac.uk/~gav/bgen_format/spec/latest.html
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Hi Akhil, unfortunately it seems there is legal stuff by that route too, in that the HRC panel doesn't appear to be publicly available.
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Hi Rona, [I still think it is unlikely to get you any useful data]. Definitively, you can download the genotype data in field 22418 from the RAP to your university's servers. It is your universit...
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Unfortunately, the HRC doesn't appear to be one of the Reference Panels available from Michigan, see https://github.com/genepi/imputationserver-docker. Worse yet, this paper by McCarthy et al sugge...
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The Michigan Imputation Server code is available as a Docker image, https://imputationserver.readthedocs.io/en/latest/docker/ . I don't know whether anyone has got that working on the RAP. You c...
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I guess the next question is why you believe you need the HRC panel.
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If you do decide that you need to use the Michigan Imputation Server, then it would count as a "3rd-party processor" within the terms of your project's MTA. In particular, see the 2018 amendment...
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The current cost tier for field 22418 genotype calls is d2o1s2. This can be seen on the Showcase page for field 22418.This means that a project with Tier 2 or above can download the data in fiel...
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Hi Lydia, your email has reached the Data Analyst team, and one of my colleagues has dealt with it and passed it back to the access team (main point of contact), so I would expect access to respond...
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