Rachael W
UKB Community team
Data Analyst
Comments
Recent activity by Rachael W
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I suggest you use dx run table-exporter, and use entity gp_scripts, with field-titles instead of field-names. You may need to install the table-exporter first, which can be done from the Tools > T...
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The initial set of 1483 proteins for the first lot of participants has been available since early in 2023. The next set of data will be available on the RAP after the next update (which will be ...
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Hi Akhil, I haven't tried this myself, but have you seen this Showcase page https://biobank.ndph.ox.ac.uk/showcase/label.cgi?id=1839 plateID and BatchNo are in https://biobank.ndph.ox.ac.uk/showcas...
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What is the date of your plink 1.9 version? If you are merging files that are missing some allele codes?e.g. single-sample files that were imported from .ped or 23andMe format, or multi-sample file...
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I don't think it is available yet. If you "follow" the preprint, you can get a notification of when it is published, and the publication version should include a url for the gwas data.
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Hi Akhil, 2.) Turnaround time for baskets is generally about a week, though this can vary when there are system problems or busy times such as a showcase refresh. The good news is that your lates...
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I notice that Re-Dispense is likely to take a long time (days rather than hours) as there is currently a long queue. Once it has completed: The field 30900 only indicates how many proteins have b...
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Hi Akhil, the data in your RAP project area is a copy of the main data held in the RAP. The main data was updated recently, on 12th April 2023, as Version 15.1, and that update includes the Olink...
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There is a section on the proteomics data structure in this page https://dnanexus.gitbook.io/uk-biobank-rap/getting-started/working-with-ukb-data#about-proteomics-data
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These filters would get rid of anyone with any ICD9 code for Cancer or any ICD9 code for Hospital Diagnoses:
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