Chai Fungtammasan DNAnexus Team
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Recent activity by Chai Fungtammasan
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I don't know for sure, but I don't think so. The FILTER field is a collection of tag, so you can have multiple label. The PASS has special meaning as indicate at the top of the file ##FILTER=<ID=PA...
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I make a mistake when I answered in https://community.dnanexus.com/s/question/0D5t000004RYPRNCA5/dna-nexus-and-nextflow We will post the solution on original thread.
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Whilst upgrading the platform to prepare for the release of half a million Whole Genome Sequences, we experienced a technical issue that has required us to pause the dispensing and refreshing of da...
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It probably need to be done in Jupyterlab. We don't have exact script, but we have tutorial and example code (link from tutorial page) here.https://dnanexus.gitbook.io/uk-biobank-rap/science-corner...
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No, it does not. Only out of the cloud that would incur an egress fee. Both RAP data storage and worker on the cloud.
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Could you ask this as a separate question? I think community member didn't see it that there is another question embedded here.
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I have experimented with bgen and bgen_reader package in Python. They work great. Each has pros and cons in what information it extracts for you. https://bgen-reader.readthedocs.io/en/latest/quick...
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If you can use Python, I can recommend some packages that I successfully use on bgen.
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All of this could be achieved by dx-toolkit which allow you to access all this information programmatically. See the help page for dx CLI here. https://documentation.dnanexus.com/getting-started/c...
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Thanks @Po-Ru Loh? ! I will let the product team knows right away.
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