Chai Fungtammasan DNAnexus Team

You need to liftover the GRCh37. See the training https://www.youtube.com/watch?v=jN25SIGZFDE&t=1s and example code here https://github.com/dnanexus/UKB_RAP 

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• 15 May 2023 15:18
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I just submit the report about missing .dataset. We might need your project id to investigate. I think it's best to forward this concern to ukbiobank-support@dnanexus.com, so you don't have to post...

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• 21 April 2023 22:32
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I never tried this use case before, but this sounds very useful. Before looking into dxfuse, can you check if you have download permission for these files? The MTA between UKB researchers and UKB p...

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• 08 February 2023 22:36
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@Niyati Jain? I misspell participant earlier. Just FYI.

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• 02 December 2022 17:41
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The engineers figure out what's going on. The eid present in multiple data, so it crash when we request it without specify which data we want. You can specify "entity" of the app as "participant" a...

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• 29 November 2022 19:28
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'eid' is the correct field name for participant ID, but something is wrong with Table Exporter. I have let DNAnexus product team know.  There are three ways that you can solve this issue meanwhile....

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• 29 November 2022 05:32
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It should call "eid" field. Can you try if that is working with just a few field as a test?

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• 28 November 2022 06:05
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I see. How about narrow down the pvcf file first using this https://biobank.ndph.ox.ac.uk/ukb/refer.cgi?id=837 to figure out which file contain your regions of interest and use bcftools in swiss ar...

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• 14 December 2022 01:37
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For the returned dataset that you don?t need to match with the right individual, you can get them from UKB Showcase and upload to UKB-RAP. However, some data such as TOPMed or GEL imputed data woul...

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• 15 December 2022 00:14
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Could you contact ukbiobank-support@dnanexus.com to get help regarding the billing issue? We do not have access to your project, so we don't have a full picture here.The spot vs on-demand depends o...

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• 14 February 2023 20:53
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