Chai Fungtammasan DNAnexus Team
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Recent activity by Chai Fungtammasan
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@Katie Sandford? for Glow, you may create a new topic or contact ukbiobank-support@dnanexus.com.
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Just want to keep you all posted that this is still under investigation. Here is what we know so far. 1) The BGEN needs to be compressed with zlib rather than zstd in order to be used with Hail. 2)...
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I got a problem trying this myself too with pVCF from WGS. The engineer team is looking into it. It was working with pVCF from WES that they run the test in early Sep.
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Could you try with example Hail notebooks that we just published today? We have example on how to load vcf and most common operation in Hail as well. https://community.dnanexus.com/s/question/0D5t0...
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I can't think of any reason why some instance would have problem while the other don't. Could you share your project with org-support and send E-mail to ukbiobank-support@dnanexus.com, so they cou...
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In the "info" option of log file, did you see out of memory or full storage capacity for the job that you use mem1_ssd1_v2_x16?
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This is a hard one without seeing the actual code. You may need to follow up by sending the same question above to ukbiobank-support@dnanexus.com. If you share the project with org-support, they co...
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@Ross DeVito? Can you try if this command give you what you are looking for? $ dx list database files database-xxxx 0 a2efefe4ca5/database-GGF8090JefefefX86G/bgen.mt/
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Yes, this is a common pattern that only happen when you compile the applet from WDL code rather than using native DNAnexus applet. I honestly don't fully understand the architecture reason behind ...
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What is the field id for data you are referring to?
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