Ondrej Klempir DNAnexus Team
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Recent activity by Ondrej Klempir
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Can you automate this process and submit the upload commands plus dx terminate as a bash script/subprocess, so the dx terminate will wait till the upload part is finished? I tried e.g. the followin...
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You can get some inspiration about how to specify additional input parameters at this doc page: https://documentation.dnanexus.com/developer/apps/advanced-app-tutorial More specifically, two exampl...
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What could be the closest solution, could be the code available at this doc page: https://documentation.dnanexus.com/getting-started/developer-tutorials/web-app-let-tutorials/running-rstudio-shiny-...
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Just some tips (not tested on my end). Have you tried to develop a custom applet which would install https://github.com/dnanexus/dxfuse/releases and access data using dxfuse?https://github.com/dna...
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Ah, yes, your main interest is WDL... Not sure whether this could work inside WDL. But I would definitely try to install dxfuse inside a docker container.
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Hi @Felipe Golib? and @Or Yaacov?, I would like to let you know that @Chai Fungtammasan? has recently published the following post about Hail troubleshooting for UKB data:https://community.dnane...
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Hi @Antoine Laine?,This seems like a bug. Please forward it to ukbiobank-support@dnanexus.com. Support team will be able to help you and file a bug report to engineering team.
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As a workaround, are you able to use job reuse on the whole workflow to pick up where it left off after one of these failures?
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Please refer to your MTA. Also for this question, you might need to ask UKB. Here is a general guidance:https://dnanexus.gitbook.io/uk-biobank-rap/frequently-asked-questions#can-data-be-downloaded-...
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Hi Michael, Dataset Extender sits in the Tools Library:https://dnanexus.gitbook.io/uk-biobank-rap/working-on-the-research-analysis-platform/tools-library#utility-apps Tutorial is here:https://docum...
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