Ondrej Klempir DNAnexus Team
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Recent activity by Ondrej Klempir
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I have not yet done experiments with field names. I personally prefer using field title in Table Exporter, but field names sound useful. Before I jump into running experiment - what will happen if ...
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For question "Also, if I want to obtain all instances and arrays under a Field, do I have to spell out all instances and arrays one by one, or can I just use the parent Field Name while omitting al...
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Rob, there is a file for every 50kb of the genome, and since some regions do not have variants, those files are empty. You can see which variants belong to which regions in the qc_metrics_graphtype...
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Hi James ?, Thanks for sharing your feedback with Community. Could you please forward this to ukbiobank-support@dnanexus.com? The support team will be able to document it for Eng team for considera...
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@Lucy Gunnell? I am also interested in knowing this! My subquestion is - does EID correspond to FID?--> To answer that, reading through this doc page: https://dnanexus.gitbook.io/uk-biobank-rap/sc...
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Here is a list of available RAP instance types:https://dnanexus-prod-asg-dnanexusprodassets4d7ed69b-i607e894f3ya.s3.us-east-1.amazonaws.com/images/files/UKB_Rate_Card-Current.pdf There is info abou...
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In my opinion, this will not be possible to implement in WDL. I believe that interacting with dnax database object from WDL is not supported (actually the reason is IMO that Spark WDL workflows are...
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Hi @Krzysztof Marianski?, I would like to let you know that @Chai Fungtammasan? has recently published the following post about Hail troubleshooting for UKB data: https://community.dnanexus.com/s/...
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Is there anything suspicious in the screenshots of the Spark UI? https://dnanexus.gitbook.io/uk-biobank-rap/working-on-the-research-analysis-platform/using-spark-to-analyze-tabular-data#tips-for-r...
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You could also contact ukbiobank-support@dnanexus.com and DNAnexus Support team can try to reproduce it and help you to resolve these issues. You can share the screenshots and your full notebook wi...
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