Ondrej Klempir DNAnexus Team
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Recent activity by Ondrej Klempir
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Hello, you can try to inspect all the steps that Hail is taking: https://documentation.dnanexus.com/developer/apps/developing-spark-apps#monitoring-the-spark-ui and monitor whether the job is stuck...
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Thanks Fran, and are you referring to WGS or WES? Is it e.g. 200k WGS or 450k WES etc.?
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Hello Fan, could you please tell us which dataset you mean?
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1) I think this is intentional. 2) In order to interact with files from your parent project, you must first run the following two commands in your workstation:https://documentation.dnanexus.com/dev...
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Hi James ?, I remember that some time ago I was able to remount the /mnt/project and I documented it here: https://community.dnanexus.com/s/question/0D5t000003vAWYxCAO/it-seems-that-the-recently-dx...
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Is this error reproducible with smaller data size? Is this behavior reproducible with different instance type (let's say larger memory one, such as mem3)? What if you select a higher number of com...
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+ you'd need to provide a code sample
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My idea would be - if I am able to use a tool which can stream data via dxfuse sequentially, e.g. samtools, I do not need to download whole file on the worker.
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Thank you @Barney Hill?,The observer error "Exception in thread "map-output-dispatcher-0" Exception in thread "map-output-dispatcher-1" you are reporting at https://github.com/hail-is/hail/issues/1...
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Hi @Barney Hill?, I have provided a couple of tests on UKB imputation BGEN. I was successful with reproducing all the components in this UKB RAP openBio notebook: https://github.com/dnanexus/OpenBi...
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