Daisy V
UKB Community team
Data Analyst
Comments
Recent activity by Daisy V
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Hi Luke,Yes, whenever you run any app using dx run you can set the directory for the outputs using the --destination flag. For more info please see Index of dx commands.Here is an example command:d...
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- 3 votes
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Hi Renuka,These two pages may help:https://dnanexus.gitbook.io/uk-biobank-rap/working-on-the-research-analysis-platform/accessing-phenotypic-data-as-a-filehttps://dnanexus.gitbook.io/uk-biobank-rap...
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- 3 votes
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Hi Nick,Field 22500 (RAP cohort browser location: Online Follow Up/Work environment/When occupational data entered) is not arrayed and gives information on when the questionnaire was completed. Man...
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- 0 votes
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Hi Jasper,I am reproducing the support received from DNAnexus here in case others using the forum encounter this issue. The issue is caused because the command by default tries to create an app in ...
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- 1 vote
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Hi, Each type of data collected will have a date associated with it. For example, the date of attending assessment centre is available in Field 53, with the relevant visit in each instance (see ins...
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- 0 votes
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Hi Hannah,dxdata should be available preinstalled on all Jupyter lab with Spark Cluster instances on the UKB-RAP (a spark cluster is required for interacting with the dataset). You don't need to pi...
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- 0 votes
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Hi Shangyou,There is a known issue where the GEL bgi files you are using can cause an issue with REGENIE jobs - I'm not sure if this will affect SAIGE as well, but can you try regenerating the bgi ...
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- 0 votes
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Hi Junming,Category 205 is not yet available due to a delay in data being released on the UKB-RAP after updates to Showcase. Please keep an eye on our Future Timelines page for the expected release...
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- 0 votes
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Hi Nik, Sorry to hear you are having issues.Please check the job referenced in ‘notebook_locked_by’ is not running - you can do this by looking in your Monitor tab, or by dx find job --id <job_id> ...
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Hi Karine,dx extract_dataset has a limit to the number of columns it can extract, and I suspect this is what is happening here. To extract a larger number of fields to a csv, you can use the Table ...
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