Former User of DNAx Community_42
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Latest activity by Former User of DNAx Community_42
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Former User of DNAx Community_42 commented,
I am specifically interested in the location where individuals were seen, which I believe I located here: https://biobank.ndph.ox.ac.uk/showcase/field.cgi?id=54 ! Thank you for providing the link.
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Former User of DNAx Community_42 commented,
Hi Ondrej, Thank you so much for your reply! I had a similar thought, but couldn't find any documentation on retrieving APOE dosages or the field ID for the UKB assessment center. Any additional ...
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Former User of DNAx Community_42 created a post,
incorporate some additional phenotype variables that are not included here: https://github.com/dnanexus/UKB_RAP/blob/main/end_to_end_gwas_phewas/get-phewas-data.ipynb
I am using these tutorials:https://github.com/dnanexus/UKB_RAP/blob/main/end_to_end_gwas_phewas/get-phewas-data.ipynbhttps://saigegit.github.io/SAIGE-doc/docs/Installation_docker.htmlhttps://docume...
- Former User of DNAx Community_42
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Former User of DNAx Community_42 commented,
Thank you so much! This syntax worked for me, but now I am getting a permission error. I really appreciate all your assistance. Best,Ilaria
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Former User of DNAx Community_42 commented,
Hi Alexandra, thank you so much! I still have not been able to successfully run SAK. Here is the code I am running now: run_merge="cp /mnt/project/Bulk/Genotype\ Results/Genotype\ calls/ukb22418_c...
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Former User of DNAx Community_42 created a post,
Swiss Army Knife not generating outputs (merged .bed file)?
I am using these tutorials: https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/gwas-ex and https://www.youtube.com/watch?v=762PVlyZJ-U, but the commands This is the code I'm running: run_me...
- Former User of DNAx Community_42
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- 5 comments
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