Former User of DNAx Community_4
Comments
Recent activity by Former User of DNAx Community_4
-
Hi @Ondrej Klempir?, Yes I found a solution by running a loop in VEP docker container. It is a slower approach but trying to run the docker image through swiss-army-knife was proving too difficult...
- View comment
- 0 votes
-
Hi Ondrej, Yes I was able to solve this by changing gs to aws and I kept the region as US.
- View comment
- 0 votes
-
Hi Ondrej, Thanks for the detailed reply. I actually found another way of doing this following some code from Dan King: https://discuss.hail.is/t/how-should-i-use-hail-on-the-dnanexus-rap/2277 I t...
- View comment
- 0 votes
-
I figured out the issue with help from Matej. So yes the custom .json file was not correctly formatted but also the .json file needs to be stored in the root directory and not in a subfolder. Than...
- View comment
- 0 votes
-
Hi Ondrej, I'm using three nodes. I got this error message on the python 3 console: Error summary: HailException: VEP command 'docker run -i -v /cluster/vep:/root/.vep dnanexus/dxjupyterlab-vep ./...
- View comment
- 0 votes