Former User of DNAx Community_55
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Recent activity by Former User of DNAx Community_55
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Fantastic, thanks for the clear response and the pointer to how we might solve it.
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For those, like me, who tried this in their own apps based on this response: this doesn't seem to generally be true, it only seems to be true for specific apps that DNANexus has created. I've ope...
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When I try to use a human-readable "dx://project:/path/to/file" name in my input.json, I get errors from dx run such as:```dxpy.exceptions.InvalidInput: i/o value input_linux needs to be given usin...
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Thanks. That makes sense. As an aside, it is kind of funny if FedRAMP requires this since the NIST itself recommends against requiring password cycling (See section 10.2.1 "Memorized Secrets" from ...
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The WGS FAQ actually is clear about this, but it contradicts the PDF that you linked: https://dnanexus.gitbook.io/uk-biobank-rap/500k-wgs-faq
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In that case, perhaps that document can be clarified, because that document currently states that you can select the data after the project has been created:
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The data refresh section for my application indicates that requesting the WGS data is not currently possible. Can you please clarify how we may request access within pre-existing projects?
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I tried installing dxfuse and dxpy inside the Docker. But even with their presence, because the environment variables aren't passed to the Docker image, those tools inside the Docker image don't ge...
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To flesh out the question: I would like to be able to fetch arbitrary files within each task. I have reviewed https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/guide-to-analyzing-large-samp...
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Having tried to tackle this issue now for a few days, I don't think that there is a workaround with the current DNANexus executor scripts. A consequence of /mnt/project not being mounted is that WD...
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