Former User of DNAx Community_46
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Recent activity by Former User of DNAx Community_46
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changing the json object to a plain string produces the following error ( dx version is dx v0.338.1 ) ```dxpy.exceptions.InvalidInput: i/o value bed needs to be given using DNAnexus links, code 422...
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@Ondrej Klempir? so is it an error on my side ? How can I debug this ? FYI I put my workflow in a gist, with the json params masked. https://gist.github.com/lindenb/be95478c8fdc8ca7c74339d413a484be
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I changed my params.json this is the diff``` "stage-common.bed":{ "$dnanexus_link":{ "project":"project-1234",- "_path":"Pierre/456.bed", "id":"file-7...
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{@005t0000006BZL2AAO}? thanks, I create the docker image . Bcftools works on my local computer: ```$ docker run f0f39c498d87 bcftools --versionbcftools 1.13Using htslib 1.13+ds```` I saved+ upload...
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@Alexandra Lee? thank you Alexandra .So as far as I understand "By default, job results are reused" but "A license is required to access the Smart Reuse feature. "
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@Alexandra Lee? @Chai Fungtammasan? thank you both for your answers. I'm still looking for the best solution. Although I'm a nextflow user, I was able to run a simple pipeline using WDL ( but I ...
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thanks !
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no, you're right I was not allowed to download those files !
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@Ondrej Klempir? thank you for your answer. I was exploring the ways to run workflows and to read the data. I'll leave WDL and dxfuse for now and I'll focus on running nextflow on UKBB side.
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