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Former User of DNAx Community_56

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Latest activity by Former User of DNAx Community_56

  • Former User of DNAx Community_56 commented,

    Hi, there is a table that related the protein IDs to the names here https://biobank.ndph.ox.ac.uk/showcase/coding.cgi?id=143&nl=1

  • Former User of DNAx Community_56 commented,
  • Former User of DNAx Community_56 created a post,

    How can I get the processing date for alle the 2923 proteins?

    Hello,   I have started working with the proteomics data (table 1072, field 30900). I wanted to use the date of processing, but it is only available for 1463 proteins out of 2923. I am uisng the fo...

    • Former User of DNAx Community_56
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  • Former User of DNAx Community_56 commented,

    Thanks Ondrej. It is intuitive but I wanted some official source confirming it. Thank you for the link you shared.

  • Former User of DNAx Community_56 commented,

    I now see that if I work on the directory, on jupyter notebook ('/opt/notebooks'), and I create a file, I can then save it on my project by using 'dx upload FILE'. But this does not seem to work w...

  • Former User of DNAx Community_56 commented,

    Thanks, I will contact them directly.

  • Former User of DNAx Community_56 created a post,

    SNP IDs in WGS

    Hello,   I noticed there are many cases of different variants at the same position, such as: 22   chr22:50473781:IG    0    50473781    T    TC 22   chr22:50473781:SG    0    50473781    A    T   ...

    • Former User of DNAx Community_56
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  • Former User of DNAx Community_56 created a post,

    Efficient ways to use Swiss Army Knife

    I have been using the RAP on DNA nexus running analyses on the 150k WGS data. I have mostly been using the Swiss Army Knife tool on the graphic interface to convert vcf to plink files and use thes...

    • Former User of DNAx Community_56
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  • Former User of DNAx Community_56 commented,

    Thanks for your quick reply.I have followed the video, but it still does not work.This is what I have done to save my file, and the error that was generated. write.csv(WGS_data, file = "WGS_data.cs...

  • Former User of DNAx Community_56 created a post,

    Saving files created with Rstudio

    Hello, I am running some analyses using R on the platform. I don't seem to be able to save the files that I create. I checked here https://dnanexus.gitbook.io/uk-biobank-rap/working-on-the-research...

    • Former User of DNAx Community_56
    • 3 followers
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