Former User of DNAx Community_31

Can I use Haploview on DNAnexus

Hello   I have been trying to analyze tag SNP based on the SNPs I selected using Haploview. However, it was too large to be opened on personal computer.   I wonder to know if Haploview can be used...

• Former User of DNAx Community_31
• 05 May 2023 00:00
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?Thank you for your kindly help. We have tried to dispense a new project and copy the folder /Bulk/Imputation to the new project, but we found no imputed data of TOPMED and GEL. We wonder to know i...

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• 28 April 2023 07:48
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?Thank you for your help. Besides, we found no imputed data of TOPMED and GEL in Bulk/Imputation. Are theses available now? We found they are retained in our basket.

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• 27 April 2023 08:07
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we have tried to run BOLT LMM for each chr using the code:bolt --fam chr10.fam --bim chr10.bim --bed chr10.bed --phenoFile pheno.txt --phenoCol ra --covarFile cov.txt --covarCol array --covarCol se...

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• 26 April 2023 08:04
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The code we used in Swiss Army Knife is as following: plink2 --bgen ukb22828_c3_b0_v3.bgen 'ref-last' --sample ukb22828_c3_b0_v3.sample --extract range local2.txt --keep filter.txt --geno 0.8 --ma...

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• 26 April 2023 07:53
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Thank you for your help, our imputed data is from bulk/imputation/UKB imputation from genotype. We only focus on 2 genes which is on chr3 and chr10. After QC (maf 0.01 hwe 10e-6 INFO 0.8), 3000+var...

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• 26 April 2023 07:46
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