Former User of DNAx Community_22

Don't know if it will help with Glow, but I found that in order to work with plink files (in general on UKB RAP) I have to create symbolic links first because of the special characters in the path ...

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• 28 November 2022 14:36
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Thanks, did you look up specific IDs? How many??I am curious in how to achieve the efficiency that they achieve when plotting the genomic data and calculating allele frequencies on the cohort brows...

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• 05 October 2022 14:53
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Effectively querying genotypes from the Spark genotype table

I am referring to the following incredibly useful table: geno=spark.sql(f"SELECT * FROM genotype_23146") geno.printSchema()   While the documentation states that these genotype tables are not docum...

• Former User of DNAx Community_22
• 05 October 2022 00:00
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thanks!

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• 04 October 2022 14:15
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Thanks! 

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• 04 October 2022 14:14
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Thanks Chai, I will try to set the memory and cores in the builder section, and use more memory. How do I get the event log?

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• 03 October 2022 22:51
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One more detail: I used high priority nodes only.

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• 03 October 2022 19:12
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it seems to happen frequently, that files clearly exist from my notebook/ by python, but fail with "FileNotFoundException" when submitted to a hail/spark job as in following your import pVCF tutori...

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• 03 October 2022 18:28
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I my case it's none of the above and seems to be an issue with the SSL certificates.

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• 03 October 2022 18:00
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