Former User of DNAx Community_10
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Recent activity by Former User of DNAx Community_10
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Plink GWAS on RAP produces a single txt output fileplink_gwas.plink2.PHENO1.glm.logistic.assoc.txtThe file has 12 columns#CHROM POS ID REF ALT A1 TEST OBS_CT OR LOG(OR)_SE Z_STAT PThe file I got h...
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I would like to use this code to get the same table. I have the project ID. project-GJB3GpQJBJkYK0j74jp4vJZ9How do I get the record ID.Will the rest of the code run.
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Here is graphtyper image. UNC13a is the gene I want but it does not tell me the file for position chr19:17642033-17642056
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I already know which variants belong to which regions from https://www.ncbi.nlm.nih.gov/snp/rs56041637#variant_detailsI need to locate the pVCF UKB23352_c19 file that has position chr19:17642033-1...
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I need a list of 502,494 eids and which variants of rs56041637 each one carries. When I use a viewer on a pVCF UKB23352_c19 file I see only a chromosome diagram. How do I get what I need?
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qc_metrics_graphtyper_v2.7.1_qc.tab.gz does not tell me which file I need. How do I locate the file I need?
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Once I've run 16a, how do I turn the results into a txt file I can use with locuszoom
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I created directory and phenotype file as below"/gwas_cohort_textfiles/phenotypes.v08-04-22.txt" This is what app was looking forDXCLIError: Value provided for input field "in" could not be parsed ...
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It might be working. It is generating multiple ukb22828 bed bim fam files. I guess they just have to be merged when finished.
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I am now getting output but I'm not sure what it is or where it's going[lehres01@li03c02 UKBGWAS]$ sh 11a-gwas-s2-imp37-qc-filter.shjob-GGqZ7F0J89141YvY4zyp66q5job-GGqZ7F8J891284G86z9z12Qbjob-GGqZ7...
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