Former User of DNAx Community_7

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• How can I capture Hail errors on the RAP?

  Hi all?   I have a quality-of-life question. When running Hail on DNAnexus, my notebook often gets disconnected while code is running (e.g. I need to close my laptop). I understand that I can use a...

  • 22 February 2023 00:00
  • 1 follower
  • 1 comment
  • 0 votes

• Hi all?is anyone aware of an example of code to run a PheWAS on the UKB RAP?

  I've looked through the DNAnexus and Hail documentation but haven't been able to find anything. Ideally it would be done using Hail, but that may be even harder to find.

  • 07 December 2022 00:00
  • 2 followers
  • 2 comments
  • 0 votes

• Hi folks, I have a basic question for you?how can we access the exome sequencing data (preferably as the VCFs) using HAIL on the UKB RAP?

  I was watching your video on the documentation site, and it says that the data should be available as a MatrixTable. I haven?t been able to find any further documentation on the site.   Best, Jeremy

  • 10 August 2022 00:00
  • 3 followers
  • 4 comments
  • 0 votes

• DXSearchERror encountered when running OpenBio notebook

  Hi folks?   I'm trying to run the ukb-rap-pheno-basic.ipynb. Probably a pretty basic question here, but any thoughts on what's going on with this error?   [Image: image]   Best, Jeremy

  • 16 February 2022 00:00
  • 2 followers
  • 5 comments
  • 0 votes