
Former User of DNAx Community_22
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Latest activity by Former User of DNAx Community_22
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Thanks a bunch for this, @Elias Scheer? ! Was just looking for it on RAP and in showcase.
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Informing those who may be interested: GEL imputed files on RAP are not pre-filtered, and there is no file with INFO scores available on RAP. However, one can obtain the scores using QCTOOL to get ...
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Thanks Rachael, the related publication doesn't seem to provide such information. I'll check with the authors and provide their resolution here in case they'll provide this info (i.e., location of ...
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I think there is a misunderstanding. I would like to filter the imputed GEL variants represented in the bgen files by their imputation (i.e., "info") score.
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Thanks @Ondrej Klempir, I suppose this would then require me to add a step to convert the GEL bgens to VCFs and filter on INFO scores afterwards.
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Where is INFO score information of the GEL imputed data? Why is variant filtering by INFO missing from the "End-to-end GWAS PheWAS" on ischemic heart disease documentation?
I would like to apply a variant filtering step based on INFO score to the GEL imputed data. Ideally, I'd like to apply it as a part of variant QC before association analysis, but can't find informa...
- Former User of DNAx Community_22
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