Former User of DNAx Community_14
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Latest activity by Former User of DNAx Community_14
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Former User of DNAx Community_14 commented,
Ok so in your response to your previous posts I have rerun the job with --allow-ssh --allow-debug-on AppInternalError and when I ssh to the job (dx ssh job-Gbv4F20JY20ZfPY55jJgJQPV)- I get the foll...
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Former User of DNAx Community_14 commented,
From the DNAnexus IT help desk:You are able to access the data from your project by mounting it to the job. You can do that by using dxfuse in the source code when building the applet. However, ple...
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Former User of DNAx Community_14 commented,
I resolved this issue by downloading a binary executable version of dxfuse from https://github.com/dnanexus/dxfuse/releasesand putting this in the applet/resources/usr/bin/. Hence dxfuse now seems ...
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Former User of DNAx Community_14 commented,
{@005t0000006BZL2AAO}? Thank you for your reply.I did not understand the documentation that you linked me to. However I tried the following: I built the dxfuse package on my local computer. git clo...
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Former User of DNAx Community_14 commented,
dxfuse does not seem to be installable in this way... dxpy.utils.exec_utils.DXExecDependencyError: Error while installing apt packages [{'name': 'bcftools'}, {'name': 'tabix'}, {'name': 'dxfuse'}]
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Former User of DNAx Community_14 commented,
@Ondrej Klempir? Ah right I did not know that dx fuse needed to be included in the prerequisites- how do I specify this?Currently my dxapp.json file looks like this: ```"runSpec": { "execDepends":...
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Former User of DNAx Community_14 created a post,
Is there a way to access locally stored files in project from a submitted job without having to use "dx download"
I am new to the DNANexus platform and have been trying to get to grips with the way analysis is done.I apologise if this question has been in some form before- but I have to say the documentation o...
- Former User of DNAx Community_14
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Former User of DNAx Community_14 created a post,
query cram files and collect EIDs
Hello I am new to this platform and I am trying to get the path to the CRAM files that correspond to a list of EIDs that I have.The usual command is:"dx find data --property eid=12345 --name *.cram...
- Former User of DNAx Community_14
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