Bhawana Singh

how to install Bioconductor package limma in RStudio Posit Workbench

I am running below command in RStudio Posit Workbenchif (!require("BiocManager", quietly = TRUE))   install.packages("BiocManager")BiocManager::install("limma")But it is not installing and giving n...

• Bhawana Singh
• 08 February 2026 00:48
• 2 followers
• 1 comment
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have resolved this, namung was chr1 and not 1

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• 08 February 2026 00:36
• 1 vote

Extracting participant level SNP dosage using BCPtool query

I am looking to extract participant level SNP doasage for 1 variant using below bcptools command. However, it is returning file with 0kb. Can you please guide me why I am not getting any output? I ...

• Bhawana Singh
• 02 February 2026 13:33
• 1 follower
• 1 comment
• 0 votes

Thanks Rachael, the error was due to hyphen instead of dash in front of parameter S.

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• 02 February 2026 13:26
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Thanks Rachael, this helps.I have 1 more question - how do I get participant level SNPs using bcftools query? I see it has -S option to pass samples file. I created participant list using table exp...

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• 29 January 2026 01:55
• 0 votes