Hannah Louise Nicholls

How to avoid job failures/restarts?

Hi all, I have been noticing recently that some jobs I submit via swiss army knife will only succeed after multiple tries. On the tries that fail I get this:Cause of Failure The machine running the...

• Hannah Louise Nicholls
• 23 January 2025 11:03
• 5 followers
• 4 comments
• 1 vote

Has anyone solved this? I have the same issue specifically for jupyterlab with a spark cluster

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• Edited 28 October 2024 17:41
• 0 votes

Does dxdata still work?

I have pip installed dxdata and I've tried using its functions shown in a few github notebooks. Like this one:https://github.com/dnanexus/OpenBio/blob/master/dxdata/getting_started_with_dxdata.ipyn...

• Hannah Louise Nicholls
• Edited 28 October 2024 17:30
• 4 followers
• 6 comments
• 0 votes

Thank you for your reply and for your help. Do you know where can I find the bash script? I'm only able to see downloadable zip files with executables, or on their github the source files in c++. W...

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• 09 May 2024 12:35
• 0 votes

How to use GCTA on the RAP

Hi all, I am looking to run conditional analysis via GCTA on the RAP. However, I'm not sure how to best run GCTA.At the moment I've got a setup where on the RAP I run an RStudio workbench and insta...

• Hannah Louise Nicholls
• 07 May 2024 13:56
• 4 followers
• 4 comments
• 1 vote

Thank you for your reply and your help, I suspect that the github notebook will be very useful - thank you for taking the time to develop this! And sorry for the confusion on my end, I may not be u...

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• 13 March 2024 11:51
• 0 votes