User

Robin Mjelle

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Recent activity by Robin Mjelle

  • plink --merge-list gives wrong chromosome annotations. GWAS tutorial.

    When I run plink merge “plink --merge-list files_to_merge.txt --make-bed --autosome-xy --out ukb22418_c1_22_v2_merged” I get chromosomes 23, 24, 26 and 26, which causes an error in downstream regen...

    • 4 followers
    • 2 comments
    • 0 votes

  • Reference genome for DRAGEN WGS 500k data?

    Is this the correct genomes using for working with the cram files for DRAGEN WGS 500 data:GRCh38_full_analysis_set_plus_decoy_hla.fa Thanks, 

    • 2 followers
    • 5 comments
    • 0 votes

  • Avoid data loos upon SpotInstanceInterruption

    I am running a loop with samtools across multiple samples and noticed my job was restarted (SpotInstanceInterruption), meaning that all temporary output files are lost since these are uploaded to m...

    • Edited
    • 2 followers
    • 1 comment
    • 0 votes

  • Extract all phenotypic data within a category

    Hi, I want to extract all data within “NMR metabolomics processing". Is there a way to automate this, either using table exporter or dx? Please see image for reference.  

    • 2 followers
    • 1 comment
    • 1 vote