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Molly D Data Analyst The helpers that keep the community running smoothly. UKB Community team

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Articles

Recent activity by Molly D

  • Installing tools and dependencies on UKB-RAP

    This article provides practical guidance for installing and using tools and dependencies on the UK Biobank Research Analysis Platform (UKB-RAP). It is intended for researchers who want to run analy...

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    • 1 follower
    • 0 comments
    • 1 vote

  • Overview of the UK Biobank Research Analysis Platform - video overview

     This video covers how to:  Use the UKB-RAP to find, explore and analyse UK Biobank’s phenotypic, genomic, imaging, and health record data, covering 500,000 volunteer participants Leverage the UKB-...

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    • 1 follower
    • 0 comments
    • 1 vote

  • Creating a workflow & customising your own tools on the UKB-RAP

      The webinar covers: An introduction to the Applet and Workflow Development Process How to build & run your own Applet using CLI How to build & run using Command Line Interface and Platform U...

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    • 1 follower
    • 0 comments
    • 3 votes

  • How to run tools

      Learn about: Working with Apps and Workflows in the Platform UI vs the Command Line Interface (CLI) Using popular apps like Table Exporter & Swiss Army Knife Running and monitoring batch job...

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    • 1 follower
    • 0 comments
    • 0 votes

  • Setting up a project in the UKB-RAP

    Ensure that you are listed as a Principal Investigator (PI) or collaborator on a UK Biobank-approved access application. On the Research Analysis Platform Projects screen, click the New Project bu...

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    • 3 followers
    • 0 comments
    • -43 votes

  • Introduction to Command Line Interface (CLI)

    This video is a good resource for UK Biobank researchers using the UKB-RAP.    Key chapters:  0:00 Ways to Interact with UKB-RAP 0:44 CLI, API - Why Do We Need Them? 2:43 How Does CLI Interact w...

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    • 1 follower
    • 0 comments
    • 0 votes

  • How much will it cost me to use the UKB-RAP?

    Due to funding provided by Wellcome, access to the UKB-RAP is currently free, however there are fees (payable to the platform provider, DNAnexus) for storage of uploaded or derived data, compute, a...

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    • 2 followers
    • 0 comments
    • -4 votes

  • Introduction to Workflow Description Language (WDL)

    This is a helpful resource for UK Biobank researchers using the UKB-RAP.  Key Chapters: 00:00 Introduction 05:11 General Workflows on RAP 08:10 Defining WDL & WDL Workflows 15:10 Running WDL Wo...

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    • 1 follower
    • 0 comments
    • -1 votes

  • What data can I access on the UKB-RAP?

    You can access all of the data that you could previously get from the Data Showcase, apart from items in the Returns Catalogue, and some restricted fields, which are not available in the UKB-RAP.

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    • 2 followers
    • 0 comments
    • -2 votes

  • Will I need to pay for storage of multiple copies of the data?

    The master copy of data is held by UK Biobank at our cost. You only pay for storage of data that you derive or upload into the platform. Projects can be shared between multiple researchers on the s...

    • Updated
    • 2 followers
    • 0 comments
    • -1 votes