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Molly D Data Analyst The helpers that keep the community running smoothly. UKB Community team

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Articles

Recent activity by Molly D

  • How to use RStudio workbench

    This is a good resource for UK Biobank researchers using the UKB-RAP.    Key Chapters: 00:00 Starting RStudio Workbench on RAP 01:41 Starting a Session in RStudio Workbench 01:58 Getting Files i...

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    • 4 followers
    • 0 comments
    • 1 vote

  • What tools are available on the UKB-RAP?

    You can use Jupyter Lab, RStudio and the command line to run analyses on the UKB-RAP. It includes pre-loaded bioinformatics tools, along with Python and R packages. You can also use Stata with Jupy...

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    • 4 followers
    • 0 comments
    • 0 votes

  • How to access and use dispensed data

    When you first create a new project, you won’t see the data right away. Dispensing data to your new project will take some time. Depending on the type of data being dispensed, this process can take...

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    • 1 follower
    • 0 comments
    • -6 votes

  • Connect your UK Biobank AMS account to the UKB-RAP

    Ensure that you are listed as a Principal Investigator (PI) or collaborator on a UK Biobank-approved access application. If you already have a DNAnexus account, log into the UK Biobank Research Ana...

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    • 2 followers
    • 0 comments
    • -17 votes

  • Where do I go for help about the UKB-RAP?

    You should be able to find lots of help here on the UK Biobank Community - it contains articles and posts from UK Biobank and other users, and if you don't find what you need, then you can post you...

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    • 2 followers
    • 0 comments
    • -4 votes

  • How long does it take to be up and running with the data?

    Once you have completed your mandatory training and are using the UKB-RAP, then it usually takes up to 24 hours for data to dispense to your project’s workspace (a private space on the UKB-RAP with...

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    • 2 followers
    • 0 comments
    • 0 votes

  • COVID-19 data

    Facilitating COVID-19 research To facilitate rapid research into the determinants and consequences of COVID-19, in 2020 and 2021 we made the following health record data regularly available:  Diag...

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    • 2 followers
    • 0 comments
    • -3 votes

  • Use of Artificial Intelligence (AI) applications and models

    UK Biobank is well aware of the many recent AI-related developments in clinical research.  UK Biobank considers that the use of AI applications and models is a reasonable (and indeed inevitable) ap...

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    • 2 followers
    • 0 comments
    • 5 votes

  • I do not know if my software runs on the UKB-RAP, what should I do?

    Please check this list of pre-loaded software. If your software is not on the list, or mentioned in the Community’s Forum, then you can ask a question in the Forum, or Submit a Request to the Acces...

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    • 2 followers
    • 0 comments
    • -1 votes

  • Can statistical software be imported into the UKB-RAP?

    Currently, support for statistical tools is via the use of RStudio and Jupyter notebooks with support for Stata, R and Python. We are always keen to hear from users and the feedback will guide the ...

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    • 2 followers
    • 0 comments
    • 0 votes