Dr. Mc. Ninja
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Recent activity by Dr. Mc. Ninja
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"timeout": 600000, ← This looks like what you want?
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From the url provided:Alternatively, use the provided helper file named ukb23145_300k_OQFE.90pct10dp_qc_variants.txt, which is a single-column text file containing variants failing the “90pct10dp” ...
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Can you provide the exact error? it seems your post got truncated.Can you explain step by step what you were doing? I'm not familiar with download and upload data job on jupyterlab instance on spar...
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Glad this worked. Can you paste the whole of `dx describe <job-id> --json` (with anything sensitive redacted)? I'm not familiar with the output, but I wonder if timeoutPolicyByExecutable is the rig...
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Let me know if the below is accurate or just slop.kthxbi There is no rule that stops you from submitting thousands of jobs, but two built-in throttles explain why only a few of your 1 000 low-prior...
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Hi Gabriele Maria Sgarlata Here is a suggestion from my assistant. Let me know if it's any help or not. Plesae bear in mind that, while enthusiastic, she's a bit confused by the amount of document...
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https://community.ukbiobank.ac.uk/hc/en-gb/community/posts/24641199060125/comments/24813371215005 So nice Gabriel Doctor ! I wonder if RAP people could make this the default behaviour!
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I got the answer below from my assistant, but when I tried it, I didn't see the option to import pipeline.It seems that DNANexus DOES have this feature, but that UKB RAP doesn't have it enabled.e.g...
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Bastien Rioux , can you find the URL for the gitbook page on GitHub? In theory it's possible to make a PR against the docs, but I think they made the docs closed source.
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Anushka Sinha From this page it looks like they are SNPs that fail QC, specifically: plink --bfile <original> --out <filtered> --exclude ukb23145_300k_OQFE.90pct10dp_qc_variants.txt --keep-allele-o...
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