Eric Kernfeld
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Recent activity by Eric Kernfeld
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People viewing this thread in the future may also want schemas 9 and 10 from https://biobank.ndph.ox.ac.uk/showcase/schema.cgi . (Indispensably important instance indexing interpretation info is in…)
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Thank you very much! That's exactly what I needed.
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There is a similar tool that does have a default behavior of saving files as they become available: WDL scatter with Smart Reuse.
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Note to self: a good example of unusual DNAnexus failures if I decide to go down that path is in analysis-J60PjYQJbkgq6yx42q98gj97
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More reading on this topic:Jonathan Margoliash's threads provides a possible path to calling Spark jobs from WDL. But they end with no resolution to the DNAnexus bugs and with a recommendation to u...
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FYI, there is currently a permissions problem with the solution linked on this thread. I have reported it on the relevant repo. https://github.com/dnanexus/dnanexus-example-applets/issues/22
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Alexandra Lee When you write "Just for reference here is how to setup the Tensorboard app and run it via CLI", did you mean to include a link?
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Thank you so much for clueing me in about this! My exact problem!
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Can you share the value you are using for <path_to_folder_on_UKB_RAP>? For mine, I succeeded with /olink_data_53k/GWAS, where olink_data_53k is a subfolder of my main project folder (shown in scree...
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I'm having a similar issue with a Jupyter notebook, and I think I can wait for it to resolve, but could you point out where in the Monitor tab to check the session status? There's a field for “stat...
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