Are UKB pVCF wes files truly bgzipped? Former User of DNAx Community_22 03 October 2022 00:00 2 comments They have the suffix .gz, but how can I know if they are truly blocked gzipped, or not? Thanks! Or Comments 2 comments Sort by Date Votes Ondrej Klempir DNAnexus Team 04 October 2022 10:08 I checked that using file (https://en.wikipedia.org/wiki/File_(command)) command executed inside ttyd workstation: file "/mnt/project/Bulk/Exome sequences/Population level exome OQFE variants, pVCF format - X/X.vcf.gz"/mnt/project/Bulk/Exome sequences/Population level exome OQFE variants, pVCF format - X/X.vcf.gz: Blocked GNU Zip Format (BGZF; gzip compatible), block length 10489 0 Former User of DNAx Community_22 04 October 2022 14:14 Thanks! 0 Please sign in to leave a comment.
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I checked that using file (https://en.wikipedia.org/wiki/File_(command)) command executed inside ttyd workstation:
file "/mnt/project/Bulk/Exome sequences/Population level exome OQFE variants, pVCF format - X/X.vcf.gz"
/mnt/project/Bulk/Exome sequences/Population level exome OQFE variants, pVCF format - X/X.vcf.gz: Blocked GNU Zip Format (BGZF; gzip compatible), block length 10489
Thanks!
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